Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00711 ATGGGCGATACTGAAGATGTTCATACCGATAGCTTTCGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCCTCTTCTGTGAAGCATAATTTCTCTATGGATCAGCTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAATCGAAGAATGGGAATACCACCGCAGATCCCACCAATCTCTCCGTATTCTCAGATCCCGGTGTCGCGTCCGATGAACCAGCACAGTTATAGCTCTGTTCCTACTCATTCACGATCGTTATCTCAGCCTTCTTTCTTCTCTTTCGATTCCTTGCCGCCTTTAAGCCCCTCTCCATTTCGGGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGATAGGGATGCTAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCGCAGATGGGAGATGCTTTACCCCCTCGTAAAGCACATAGGAGGTCCAATAGTGATATTCCGTTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTAAGTGGCTCAGGTGGTTTGGAGCGATCAACAAATAGTAAAGAGAATGTGGGCATGTTTAAGCCGGGTAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAGGCATTGATAACAATTTGGAAGGAATGGGTGAAAGGAAGCCCGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCTGGGGCCGACGACAAGAATGGTCATGAGAAACGGGAGGATTTGGATAGTAGAGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCTGAAAGCAGTGTAAATGAAAGTGGGGATAGCGCTCAAATGCCTGGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGCGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGATGAGTCGCCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCGGGGCAACTTTCATCAAACAACTTAGTTGATGGTAATTCCGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCCGAACTGAAGAAAATTATGGCGAACGACAAACTTGCTGAGATTGCACTATCCGATCCCAAGCGTGCTAAGAGGATCTTGGCGAACCGTCAATCTGCTGCTCGATCGAAAGAACGTAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTACAGCGAGACTCAGTTGGACTTACAAATCAGAATAATGAGCTGAAGTTTCGTCTCCAAGCCATGGAACAGCAAGCACAATTACGGGATGCTCTAAATGAAGCGTTAACCGGGGAGGTTCAGCGATTGAAGCTCGCTACAACCGATATAAACGCGCAATCTCATCCCTCAAACGGGGTAATATCTCAATCATCTATGAATCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCACCAACAACATATGCAGCAAAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1683 45.57 MGDTEDVHTDSFRNLQCSFGTSSSSSVKHNFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRMGIPPQIPPISPYSQIPVSRPMNQHSYSSVPTHSRSLSQPSFFSFDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSQMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPLSGSGGLERSTNSKENVGMFKPGSQFVKREPSLEKGIDNNLEGMGERKPEGDTVDDLFSAYMNLDNIDLFNSSGADDKNGHEKREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTGEVQRLKLATTDINAQSHPSNGVISQSSMNHHGLQLQLQQQHQQHMQQNGSATTKPESNQ 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7459367 7462818 + CmoCh19G007110.1 Cmo19g00711 403871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00711 560 SMART brlzneu 413 477 IPR004827 GO:0003700|GO:0006355
Cmo19g00711 560 MobiDBLite consensus disorder prediction 223 245 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 78 95 - -
Cmo19g00711 560 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 415 478 IPR004827 GO:0003700|GO:0006355
Cmo19g00711 560 CDD bZIP_plant_RF2 418 467 IPR044759 GO:0003700|GO:0006355
Cmo19g00711 560 MobiDBLite consensus disorder prediction 49 95 - -
Cmo19g00711 560 Gene3D - 416 468 - -
Cmo19g00711 560 Pfam bZIP transcription factor 417 471 IPR004827 GO:0003700|GO:0006355
Cmo19g00711 560 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 71 551 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 351 379 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 267 283 - -
Cmo19g00711 560 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 71 551 - -
Cmo19g00711 560 SUPERFAMILY Leucine zipper domain 417 468 IPR046347 GO:0003700|GO:0006355
Cmo19g00711 560 MobiDBLite consensus disorder prediction 263 338 - -
Cmo19g00711 560 Coils Coil 433 488 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 533 560 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 176 211 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 284 315 - -
Cmo19g00711 560 MobiDBLite consensus disorder prediction 110 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01088 Cmo-Chr11:6083881 Cmo19g00711 Cmo-Chr19:7459367 1.87E-16 dispersed
Cmo19g00711 Cmo-Chr19:7459367 Cmo20g00333 Cmo-Chr20:1631748 1.39E-51 dispersed
Cmo19g00711 Cmo-Chr19:7459367 Cmo19g00713 Cmo-Chr19:7466810 0 proximal
Cmo11g01085 Cmo-Chr11:6077128 Cmo19g00711 Cmo-Chr19:7459367 4.47E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11641 PF00170 bZIP_1 9.80E-09 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00711 - - cpep:111776417 1008.44