Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00711 | ATGGGCGATACTGAAGATGTTCATACCGATAGCTTTCGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCCTCTTCTGTGAAGCATAATTTCTCTATGGATCAGCTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAATCGAAGAATGGGAATACCACCGCAGATCCCACCAATCTCTCCGTATTCTCAGATCCCGGTGTCGCGTCCGATGAACCAGCACAGTTATAGCTCTGTTCCTACTCATTCACGATCGTTATCTCAGCCTTCTTTCTTCTCTTTCGATTCCTTGCCGCCTTTAAGCCCCTCTCCATTTCGGGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGATAGGGATGCTAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCGCAGATGGGAGATGCTTTACCCCCTCGTAAAGCACATAGGAGGTCCAATAGTGATATTCCGTTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTAAGTGGCTCAGGTGGTTTGGAGCGATCAACAAATAGTAAAGAGAATGTGGGCATGTTTAAGCCGGGTAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAGGCATTGATAACAATTTGGAAGGAATGGGTGAAAGGAAGCCCGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCTGGGGCCGACGACAAGAATGGTCATGAGAAACGGGAGGATTTGGATAGTAGAGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCTGAAAGCAGTGTAAATGAAAGTGGGGATAGCGCTCAAATGCCTGGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGCGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGATGAGTCGCCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCGGGGCAACTTTCATCAAACAACTTAGTTGATGGTAATTCCGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCCGAACTGAAGAAAATTATGGCGAACGACAAACTTGCTGAGATTGCACTATCCGATCCCAAGCGTGCTAAGAGGATCTTGGCGAACCGTCAATCTGCTGCTCGATCGAAAGAACGTAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTACAGCGAGACTCAGTTGGACTTACAAATCAGAATAATGAGCTGAAGTTTCGTCTCCAAGCCATGGAACAGCAAGCACAATTACGGGATGCTCTAAATGAAGCGTTAACCGGGGAGGTTCAGCGATTGAAGCTCGCTACAACCGATATAAACGCGCAATCTCATCCCTCAAACGGGGTAATATCTCAATCATCTATGAATCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCACCAACAACATATGCAGCAAAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA | 1683 | 45.57 | MGDTEDVHTDSFRNLQCSFGTSSSSSVKHNFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRMGIPPQIPPISPYSQIPVSRPMNQHSYSSVPTHSRSLSQPSFFSFDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSQMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPLSGSGGLERSTNSKENVGMFKPGSQFVKREPSLEKGIDNNLEGMGERKPEGDTVDDLFSAYMNLDNIDLFNSSGADDKNGHEKREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTGEVQRLKLATTDINAQSHPSNGVISQSSMNHHGLQLQLQQQHQQHMQQNGSATTKPESNQ | 560 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7459367 | 7462818 | + | CmoCh19G007110.1 | Cmo19g00711 | 403871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00711 | 560 | SMART | brlzneu | 413 | 477 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 223 | 245 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 78 | 95 | - | - | |
Cmo19g00711 | 560 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 415 | 478 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo19g00711 | 560 | CDD | bZIP_plant_RF2 | 418 | 467 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 49 | 95 | - | - | |
Cmo19g00711 | 560 | Gene3D | - | 416 | 468 | - | - | |
Cmo19g00711 | 560 | Pfam | bZIP transcription factor | 417 | 471 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo19g00711 | 560 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 71 | 551 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 351 | 379 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 267 | 283 | - | - | |
Cmo19g00711 | 560 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 71 | 551 | - | - | |
Cmo19g00711 | 560 | SUPERFAMILY | Leucine zipper domain | 417 | 468 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 263 | 338 | - | - | |
Cmo19g00711 | 560 | Coils | Coil | 433 | 488 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 533 | 560 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 176 | 211 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 284 | 315 | - | - | |
Cmo19g00711 | 560 | MobiDBLite | consensus disorder prediction | 110 | 245 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01088 | Cmo-Chr11:6083881 | Cmo19g00711 | Cmo-Chr19:7459367 | 1.87E-16 | dispersed | |
Cmo19g00711 | Cmo-Chr19:7459367 | Cmo20g00333 | Cmo-Chr20:1631748 | 1.39E-51 | dispersed | |
Cmo19g00711 | Cmo-Chr19:7459367 | Cmo19g00713 | Cmo-Chr19:7466810 | 0 | proximal | |
Cmo11g01085 | Cmo-Chr11:6077128 | Cmo19g00711 | Cmo-Chr19:7459367 | 4.47E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11641 | PF00170 | bZIP_1 | 9.80E-09 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00711 | - | - | cpep:111776417 | 1008.44 |