Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00713 ATGGGAGATACTGACGATGCTAATGCTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGCATCTTCTTCTTTTGCTGGAAATCTTCCTTTGTCGATGGATCAACTTAAAATTTCTCAAATGAACTGCTCCCAAATTCGTCCACCACACTTTCAGTCAAATTTTCTTAGTGATAATAGTAGAAGAATTGGGATTCCTCCTAGCCCGAACTCACCGCAGATCCCACCGATTTCGCCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAAAATTATAGCCCAGTGCCTACTCATTCCCGATCGTTATCTCAGCCTTCTTTCTTTTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGCGAGTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCCCATTCTTTGTTGCCTCCCTCACCTTATATGAGAGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAGTAGCTCTGGTGGATTGGAGCGATCTACGAGTAGTAAAGAGAATGCTGGCATGTTAAAGCCCGCCAGCCAGTTAGTTAAAAGAGAACATAGTTTGGAGAAAAACGTTGACAACAATTTAGAAGGAATGAGTGAGAGGAAATCCGATGGGGACAATGTGGACGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCTGGGACGAACGACAAGAACGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACGAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAGAGTGGGGATAGCGCTCAAATGCCTCGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGCGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGACGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCGGGGCAACTTTCTTCAAACAACTTAGTTGACGGTAATTCAGCTTCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATCATGGCAAATGACAAACTTGCCGAGATTGCTTTGACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTAGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACTCTTTTACAGAGAGATTCAGTAGGGCTTACAAACCAGAATAATGAACTGAAGTTCCGTCTTCAAGCCATGGAACAACAAGCACAACTACGGGACGCTCTTAACGAAACCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACGATGGAGCTAAACGCGCAGTCTCATCCCTCTAACGGAGTAATGCCCCAATCTTCCATCAGTCACCATAGCCTCCAGCTTCAGCTTCAGCACCACCAACAACAACAGCAACAGATGCAGCAGAATGGAAGTGCAACCACAAAGCCTGAATCCAACCAATAA 1704 45.07 MGDTDDANAENMRNLQCSYGASSSFAGNLPLSMDQLKISQMNCSQIRPPHFQSNFLSDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYSPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPSTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFSSSGGLERSTSSKENAGMLKPASQLVKREHSLEKNVDNNLEGMSERKSDGDNVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPRLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSASFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNETLTAEVQRLKLATMELNAQSHPSNGVMPQSSISHHSLQLQLQHHQQQQQQMQQNGSATTKPESNQ 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7466810 7470189 + CmoCh19G007130.1 Cmo19g00713 403873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00713 567 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700|GO:0006355
Cmo19g00713 567 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 564 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 289 320 - -
Cmo19g00713 567 Gene3D - 421 473 - -
Cmo19g00713 567 Coils Coil 536 556 - -
Cmo19g00713 567 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700|GO:0006355
Cmo19g00713 567 MobiDBLite consensus disorder prediction 224 249 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 181 216 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 68 82 - -
Cmo19g00713 567 Coils Coil 501 521 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 357 380 - -
Cmo19g00713 567 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700|GO:0006355
Cmo19g00713 567 Coils Coil 438 493 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 49 249 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 49 67 - -
Cmo19g00713 567 SMART brlzneu 418 482 IPR004827 GO:0003700|GO:0006355
Cmo19g00713 567 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700|GO:0006355
Cmo19g00713 567 MobiDBLite consensus disorder prediction 83 115 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 522 567 - -
Cmo19g00713 567 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 564 - -
Cmo19g00713 567 MobiDBLite consensus disorder prediction 268 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01085 Cmo-Chr11:6077128 Cmo19g00713 Cmo-Chr19:7466810 4.88E-08 dispersed
Cmo11g01086 Cmo-Chr11:6078200 Cmo19g00713 Cmo-Chr19:7466810 0 dispersed
Cmo11g01089 Cmo-Chr11:6085440 Cmo19g00713 Cmo-Chr19:7466810 0 dispersed
Cmo19g00713 Cmo-Chr19:7466810 Cmo20g00333 Cmo-Chr20:1631748 9.81E-52 dispersed
Cmo19g00711 Cmo-Chr19:7459367 Cmo19g00713 Cmo-Chr19:7466810 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11642 PF00170 bZIP_1 9.20E-09 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00713 - - cpep:111776417 970.304