Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00713 | ATGGGAGATACTGACGATGCTAATGCTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGCATCTTCTTCTTTTGCTGGAAATCTTCCTTTGTCGATGGATCAACTTAAAATTTCTCAAATGAACTGCTCCCAAATTCGTCCACCACACTTTCAGTCAAATTTTCTTAGTGATAATAGTAGAAGAATTGGGATTCCTCCTAGCCCGAACTCACCGCAGATCCCACCGATTTCGCCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAAAATTATAGCCCAGTGCCTACTCATTCCCGATCGTTATCTCAGCCTTCTTTCTTTTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGCGAGTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCCCATTCTTTGTTGCCTCCCTCACCTTATATGAGAGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAGTAGCTCTGGTGGATTGGAGCGATCTACGAGTAGTAAAGAGAATGCTGGCATGTTAAAGCCCGCCAGCCAGTTAGTTAAAAGAGAACATAGTTTGGAGAAAAACGTTGACAACAATTTAGAAGGAATGAGTGAGAGGAAATCCGATGGGGACAATGTGGACGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCTGGGACGAACGACAAGAACGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACGAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAGAGTGGGGATAGCGCTCAAATGCCTCGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGCGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGACGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCGGGGCAACTTTCTTCAAACAACTTAGTTGACGGTAATTCAGCTTCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATCATGGCAAATGACAAACTTGCCGAGATTGCTTTGACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTAGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACTCTTTTACAGAGAGATTCAGTAGGGCTTACAAACCAGAATAATGAACTGAAGTTCCGTCTTCAAGCCATGGAACAACAAGCACAACTACGGGACGCTCTTAACGAAACCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACGATGGAGCTAAACGCGCAGTCTCATCCCTCTAACGGAGTAATGCCCCAATCTTCCATCAGTCACCATAGCCTCCAGCTTCAGCTTCAGCACCACCAACAACAACAGCAACAGATGCAGCAGAATGGAAGTGCAACCACAAAGCCTGAATCCAACCAATAA | 1704 | 45.07 | MGDTDDANAENMRNLQCSYGASSSFAGNLPLSMDQLKISQMNCSQIRPPHFQSNFLSDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYSPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPSTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFSSSGGLERSTSSKENAGMLKPASQLVKREHSLEKNVDNNLEGMSERKSDGDNVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPRLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSASFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNETLTAEVQRLKLATMELNAQSHPSNGVMPQSSISHHSLQLQLQHHQQQQQQMQQNGSATTKPESNQ | 567 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7466810 | 7470189 | + | CmoCh19G007130.1 | Cmo19g00713 | 403873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00713 | 567 | SUPERFAMILY | Leucine zipper domain | 422 | 473 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo19g00713 | 567 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 76 | 564 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 289 | 320 | - | - | |
Cmo19g00713 | 567 | Gene3D | - | 421 | 473 | - | - | |
Cmo19g00713 | 567 | Coils | Coil | 536 | 556 | - | - | |
Cmo19g00713 | 567 | Pfam | bZIP transcription factor | 422 | 476 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 224 | 249 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 181 | 216 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - | |
Cmo19g00713 | 567 | Coils | Coil | 501 | 521 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 357 | 380 | - | - | |
Cmo19g00713 | 567 | CDD | bZIP_plant_RF2 | 423 | 472 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo19g00713 | 567 | Coils | Coil | 438 | 493 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 49 | 249 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 49 | 67 | - | - | |
Cmo19g00713 | 567 | SMART | brlzneu | 418 | 482 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo19g00713 | 567 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 420 | 483 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 83 | 115 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 522 | 567 | - | - | |
Cmo19g00713 | 567 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 76 | 564 | - | - | |
Cmo19g00713 | 567 | MobiDBLite | consensus disorder prediction | 268 | 343 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01085 | Cmo-Chr11:6077128 | Cmo19g00713 | Cmo-Chr19:7466810 | 4.88E-08 | dispersed | |
Cmo11g01086 | Cmo-Chr11:6078200 | Cmo19g00713 | Cmo-Chr19:7466810 | 0 | dispersed | |
Cmo11g01089 | Cmo-Chr11:6085440 | Cmo19g00713 | Cmo-Chr19:7466810 | 0 | dispersed | |
Cmo19g00713 | Cmo-Chr19:7466810 | Cmo20g00333 | Cmo-Chr20:1631748 | 9.81E-52 | dispersed | |
Cmo19g00711 | Cmo-Chr19:7459367 | Cmo19g00713 | Cmo-Chr19:7466810 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11642 | PF00170 | bZIP_1 | 9.20E-09 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00713 | - | - | cpep:111776417 | 970.304 |