Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00722 ATGGGTTTCCGTCTGCCTAGAATTGTTAGTACTAAGCAAAGTCTTCAGCGATCTTCATCGACAGGGAACGGAGCATCTCCAAAGGCTGTTGACGTTCCAAAGGGCTACTTTACAGTTTATGTTGGTGAAGCACAAAAGAAGCGTTTTGTCATTCCACTATCTTACTTGAACCAGCCTTCTTTCCAAGATTTGTTGAGTCAAGCAGAGGAAGAATTTGGATATAATCATCCAATGGGTGGCATTACAATTCCTTGCAGTGAAGACAATTTCCTCGATCTCACTCGGAGTTTGAATGACTCATGA 303 42.24 MGFRLPRIVSTKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCSEDNFLDLTRSLNDS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7518944 7519246 - CmoCh19G007220.1 Cmo19g00722 403882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00722 100 PANTHER - 11 96 - -
Cmo19g00722 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 96 IPR003676 GO:0009733
Cmo19g00722 100 MobiDBLite consensus disorder prediction 1 30 - -
Cmo19g00722 100 Pfam Auxin responsive protein 17 96 IPR003676 GO:0009733
Cmo19g00722 100 MobiDBLite consensus disorder prediction 9 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00722 K14488 SAUR; SAUR family protein - csv:105436057 189.504
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00346 Cmo19g00722 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01712 Cmo-Chr11:12150597 Cmo19g00722 Cmo-Chr19:7518944 6.82E-64 dispersed
Cmo11g01713 Cmo-Chr11:12153104 Cmo19g00722 Cmo-Chr19:7518944 7.72E-63 dispersed
Cmo11g01714 Cmo-Chr11:12155447 Cmo19g00722 Cmo-Chr19:7518944 1.40E-55 dispersed
Cmo19g00722 Cmo-Chr19:7518944 Cmo19g00724 Cmo-Chr19:7523419 4.35E-71 dispersed
Cmo20g00804 Cmo-Chr20:3960038 Cmo19g00722 Cmo-Chr19:7518944 2.17E-34 dispersed
Cmo19g00718 Cmo-Chr19:7510929 Cmo19g00722 Cmo-Chr19:7518944 4.06E-34 proximal
Cmo19g00721 Cmo-Chr19:7514737 Cmo19g00722 Cmo-Chr19:7518944 1.36E-54 tandem
Cmo19g00722 Cmo-Chr19:7518944 Cmo19g00723 Cmo-Chr19:7520560 6.03E-50 tandem
Cmo19g00722 Cmo-Chr19:7518944 Cmo20g00802 Cmo-Chr20:3954200 1.09E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g71 . . . . . . . . Cmo19g00722 . Cma02g00348 Cma20g00783 . . Sed05g2271 . . Bhi05g01765 Tan02g0733 Cmetu01g2428 . . . . . . . . . . . Cone12ag1204 Cone8ag1250 . . Lsi10g00442 . Chy11g00317 . . . . . . . Bma03g00582 . Sed01g0244 Cmo02g00346 . . . . . . . Bhi10g01917 Tan05g1217 Cmetu11g1982 . . . . . . . . . . . . Csa02g01327 . Cme11g00435
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00722 Cmo_Chr19 FPKM 14.581893 16.984755 27.944468 28.621773 16.246752 15.304334 15.119142 46.885159 49.692177 54.557674