Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00724 ATGGGTTTCCGTCTGCCTAGAATTGTTAGTACTAAGCAAAGTCTTCAGCGATCTTCATCAACAGGGAATGGAGCATCTCCAAAGGCTGTCGATGTTCCAAAGGGATACTTCACGGTTTATGTTGGTGAAGCACAAAAGAAGCGTTTTGTCATTCCACTATCTTACTTGAACCAGCCTTCGTTTCAAGATTTGTTGAGTCAAGCAGAGGAAGAATTTGGATACAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGACGATTTCCTCGATCTCACTCGGAGTTTGAATGACTCATGA 303 42.9 MGFRLPRIVSTKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCSEDDFLDLTRSLNDS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7523419 7523721 - CmoCh19G007240.1 Cmo19g00724 403884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00724 100 PANTHER - 11 96 - -
Cmo19g00724 100 MobiDBLite consensus disorder prediction 1 30 - -
Cmo19g00724 100 Pfam Auxin responsive protein 17 96 IPR003676 GO:0009733
Cmo19g00724 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 96 IPR003676 GO:0009733
Cmo19g00724 100 MobiDBLite consensus disorder prediction 9 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00724 K14488 SAUR; SAUR family protein - csv:105436057 189.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00721 Cmo-Chr19:7514737 Cmo19g00724 Cmo-Chr19:7523419 1.96E-54 dispersed
Cmo19g00722 Cmo-Chr19:7518944 Cmo19g00724 Cmo-Chr19:7523419 4.35E-71 dispersed
Cmo19g00724 Cmo-Chr19:7523419 Cmo19g00728 Cmo-Chr19:7542842 2.36E-40 dispersed
Cmo20g00802 Cmo-Chr20:3954200 Cmo19g00724 Cmo-Chr19:7523419 1.40E-22 dispersed
Cmo19g00724 Cmo-Chr19:7523419 Cmo19g00726 Cmo-Chr19:7538212 1.34E-32 proximal
Cmo19g00723 Cmo-Chr19:7520560 Cmo19g00724 Cmo-Chr19:7523419 2.05E-56 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g75 . . . . . . . . Cmo19g00724 . . Cma20g00780 . . . . . Bhi05g01762 Tan02g0722 Cmetu01g0683 . . . . Cla02g00466 Cam02g0473 Cec02g0472 . Clacu02g0476 Cmu02g0471 Cre02g0803 . . . . Lsi10g00451 Csa07g00060 Chy11g00312 Cme01g01303 . . . Bda14g00596 . . . . Sed05g3572 . . . . . . . . Bhi10g01910 Tan05g1209 Cmetu02g0248 . . . . . . . . . . . Lsi11g01163 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00724 Cmo_Chr19 FPKM 114.078072 124.81517 78.966995 84.306923 85.723534 81.282341 88.056702 69.397575 68.766884 72.044098