Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00728 ATGGACTGCCTACCCACACCAACCGAGATGGAAGCTCGCAATCCCTCCCTAATCCCACACGACTTCGATCCTTCCAGTGGAGAACTAGATCATGGTATTGAACATGGCATACCAATGCCAAGGACAGCTAAAGATTCAAATGCAGAAGTATCCATTCCAGTACTTGACACAGTAAGTTCAAAAGGCAATTCAAAAACAGGGCCTCTTCTTTCTTCTAATCCTACAGAGATGGGAATCCATTTGACAGGAATAGCAAACGCAAAGCAAAAGCTACAGAGAACACTTTCGGAGAAATACGGGATTGGATCGGCAGTCACGAATGTTCCTAAAGGGCATTTCGCAGTGTACGTAGGAGAAACTAGGAAGAAGAGATTTGTTATTCCGATATCGTACCTGAATCATCCATTGTTCAAGGATTTGCTGAACCTGGCGGAAGAGGAATTTGGATTCGATCATCCAATGGGCGGCCTCACGATTCCTTGCAGCGAAGACTACTTCATCAGCTTAACTTCATCCCTAAATTGTTCATAA 531 44.26 MDCLPTPTEMEARNPSLIPHDFDPSSGELDHGIEHGIPMPRTAKDSNAEVSIPVLDTVSSKGNSKTGPLLSSNPTEMGIHLTGIANAKQKLQRTLSEKYGIGSAVTNVPKGHFAVYVGETRKKRFVIPISYLNHPLFKDLLNLAEEEFGFDHPMGGLTIPCSEDYFISLTSSLNCS 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7542842 7544360 + CmoCh19G007280.1 Cmo19g00728 403888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00728 176 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 80 176 - -
Cmo19g00728 176 Pfam Auxin responsive protein 99 172 IPR003676 GO:0009733
Cmo19g00728 176 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 80 176 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00728 K14488 SAUR; SAUR family protein - csv:101203821 190.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01713 Cmo19g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01717 Cmo-Chr11:12172279 Cmo19g00728 Cmo-Chr19:7542842 5.70E-65 dispersed
Cmo19g00724 Cmo-Chr19:7523419 Cmo19g00728 Cmo-Chr19:7542842 2.36E-40 dispersed
Cmo19g00728 Cmo-Chr19:7542842 Cmo20g00796 Cmo-Chr20:3937286 2.45E-35 dispersed
Cmo19g00728 Cmo-Chr19:7542842 Cmo19g00729 Cmo-Chr19:7550787 1.61E-30 tandem
Cmo19g00728 Cmo-Chr19:7542842 Cmo20g00776 Cmo-Chr20:3902900 3.86E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g81 . . . . . Bpe12g00104 . . Cmo19g00728 Cmo11g01713 . . . . . . . . . . . . . . Cla02g00458 Cam02g0466 Cec02g0465 . Clacu02g0468 Cmu02g0462 Cre02g0796 . . . . . Csa07g00063 . . . . Bda15g01052 . Bpe15g00833 . . . Sed01g0247 . . Cma11g01407 Cma19g00717 . . . . Bhi10g01907 Tan05g1206 Cmetu11g0253 . . . . . . . . . . . Lsi11g01166 Csa02g01342 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00728 Cmo_Chr19 FPKM 23.909153 25.113958 36.532379 39.354561 27.932671 27.31455 28.117329 41.932934 37.03442 37.195362