Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00731 ATGACTCTTCCCCAGGACATTCAGAGCTCTGCAGAGGATTACATGGATTCTCAGACTCACAGCAACCGCCCAATTTCATCTATTCTCATCATAATCGCTATGCAGACCGAAGCGCTTCCTTTGGTGGAGAAGTTTCAGCTCTCCGAAGATCATAACTCTGTTTCAAGTTACCTCTCAGGAGTTGATAGTGTCGGCACGATTTCTGCTTCGCTCGTAACCTATGCTTCTATCCAAGCATTGCAACCAGACCTGATCATCAATGCAGGCACTGCTGGTGGTTTTAAGGCCAAAGGAGCTAGCATTGGCGATGTGTTTCTGGTATCTGAGTGTGCCTTCCACGACAGACGTATACCTATTCCAGTTTTTGATTTATATGGAGTCGGATTGAAGCAAACACTGAAAACACCGAATCTTCTCGCGGGACTCGACCTAAAGGTCGGAAAATTATCAACTGGTGACTCGCTGGACATGTCCATGCAGGATGAAGCATCGATTATAGCTAACGATGCCACAGTAAAAGATATGGAGGGAGCAGCAGTTGCCTATGTTGCAGATATGTTCAAAGTTCCTGCAATATTTGTAAAAGCTGTAACTGATATCGTCGATGGCGAAAAACCAACTGCAGAAGAATTCTTGCAGAATTTAGCTACAGTTTCTGCTGCATTGGATGAAGCAGTGACACAATTCAAAATGAAAGATATGAAAAACATAAATGGGGCACAAGGAGCTTACATGGGAAAGGCCAGCTCTGGTAGAGCTACGATTTTGGCACTTGGGAAGGCCTTCCCTCCCCAACTTGTCCCTCAAGACTACCTGGTCGATGGCTATTTCAAGGATACGAGCTGCGATGATTTAGACCTCAAGCAAAAGCTCACCCGACTCTGCAAGACGACAACAGTCAAAACCAGATACGTGGTGATGTCAGAAGAGATACTGAAGAAGTACCCAGAGCTAGCAATGGAAGGCCAAGCAACCATAAAGCAGAGACTGGAGATATGCAACAAAGCTGTGACAGACATGGCCATTGAAGCCTCACAAGCTGCCATTAAGAACTGGGGAAGACCAGTTTCAGACATTACCCACTTAGTCTATGTATCTTCAAGTGAAGCTCGCCTACCTGGTGGCGATCTCTTCCTAGCGAAGGGCCTTGGGCTCAGCCCTCACACCCAGAGACTCATGCTTTACTTCATGGGTTGCTCTGGAGGCGTGGCAGGCCTTAGAGTCGCCAAAGACTTAGCTGAAAACAACCCCGGAAGCCGAGTTCTGCTTGTCACCTCTGAAACCACCATTATTGGCTACAAGCCACCGAGTGCAAATCGGCCATACGATCTGGTAGGCGTGGCCTTATTTGGGGATGGTGCAGGGGCGATGCTAATTGGCACAGACCCTGTTTTCGGCATTGAACGGCCACTCTTTGAGCTCCACACAGCAACCCAGAAATTCATTCCAAACACCCAGAACATAATCGACGGGAGACTGTCGGAGGAGGGTATTAGCTTCACAATAGCAAGAGATCTCCCTCAGATAATCGAAGATAACATCGAAAATTTCTGTGAGGCATTTCTTCAAACACTTGGGCTGCAAGAAAAAGAATACAACAAAATGTTCTGGGCAGTACATCCAGGAGGGCCAGCGATACTGAGCAGGTTAGAGAAGAGACTCGAATTGTTACCTGAGAAGCTGACGGCAAGCCGGCGAGCTCTGATGGACTATGGAAATGCGAGCAGTAACACGATCGTGTACGTACTGGAATACATGGTGGAAGAAAGCTTGAAGAAGAAGATGGGCGGTGGGGAAACTGAGGAATGGGGATTGATTCTGGCATTTGGACCTGGGATTTCGTTTGAAGGGATTCTGACGAGGAATCTTGCCGTCGGAGCATAA 1884 47.45 MTLPQDIQSSAEDYMDSQTHSNRPISSILIIIAMQTEALPLVEKFQLSEDHNSVSSYLSGVDSVGTISASLVTYASIQALQPDLIINAGTAGGFKAKGASIGDVFLVSECAFHDRRIPIPVFDLYGVGLKQTLKTPNLLAGLDLKVGKLSTGDSLDMSMQDEASIIANDATVKDMEGAAVAYVADMFKVPAIFVKAVTDIVDGEKPTAEEFLQNLATVSAALDEAVTQFKMKDMKNINGAQGAYMGKASSGRATILALGKAFPPQLVPQDYLVDGYFKDTSCDDLDLKQKLTRLCKTTTVKTRYVVMSEEILKKYPELAMEGQATIKQRLEICNKAVTDMAIEASQAAIKNWGRPVSDITHLVYVSSSEARLPGGDLFLAKGLGLSPHTQRLMLYFMGCSGGVAGLRVAKDLAENNPGSRVLLVTSETTIIGYKPPSANRPYDLVGVALFGDGAGAMLIGTDPVFGIERPLFELHTATQKFIPNTQNIIDGRLSEEGISFTIARDLPQIIEDNIENFCEAFLQTLGLQEKEYNKMFWAVHPGGPAILSRLEKRLELLPEKLTASRRALMDYGNASSNTIVYVLEYMVEESLKKKMGGGETEEWGLILAFGPGISFEGILTRNLAVGA 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7559345 7565202 - CmoCh19G007310.1 Cmo19g00731 403891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00731 627 CDD MTAN 28 222 - -
Cmo19g00731 627 Pfam Chalcone and stilbene synthases, N-terminal domain 246 463 IPR001099 -
Cmo19g00731 627 SUPERFAMILY Thiolase-like 470 621 IPR016039 GO:0016746
Cmo19g00731 627 Pfam Phosphorylase superfamily 56 227 IPR000845 GO:0003824|GO:0009116
Cmo19g00731 627 SUPERFAMILY Purine and uridine phosphorylases 28 217 IPR035994 GO:0003824|GO:0009116
Cmo19g00731 627 SUPERFAMILY Thiolase-like 249 468 IPR016039 GO:0016746
Cmo19g00731 627 Gene3D Nucleoside phosphorylase domain 22 237 IPR035994 GO:0003824|GO:0009116
Cmo19g00731 627 Gene3D - 240 465 IPR016039 GO:0016746
Cmo19g00731 627 Pfam Chalcone and stilbene synthases, C-terminal domain 473 623 IPR012328 -
Cmo19g00731 627 Gene3D - 471 623 IPR016039 GO:0016746
Cmo19g00731 627 PANTHER TYPE III POLYKETIDE SYNTHASE B 247 623 - -
Cmo19g00731 627 CDD CHS_like 253 619 - -
Cmo19g00731 627 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 247 623 IPR011141 GO:0009058|GO:0016747
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00731 - - - csv:101210994 696.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01721 Cmo19g00731 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00992 Cmo-Chr6:7793206 Cmo19g00731 Cmo-Chr19:7559345 4.02E-178 dispersed
Cmo14g02220 Cmo-Chr14:15756693 Cmo19g00731 Cmo-Chr19:7559345 5.99E-171 dispersed
Cmo17g00117 Cmo-Chr17:626941 Cmo19g00731 Cmo-Chr19:7559345 8.98E-96 dispersed
Cmo19g00731 Cmo-Chr19:7559345 Cmo04g01580 Cmo-Chr4:8069548 8.11E-09 dispersed
Cmo11g01722 Cmo-Chr11:12195453 Cmo19g00731 Cmo-Chr19:7559345 0 transposed
Cmo11g01721 Cmo-Chr11:12190758 Cmo19g00731 Cmo-Chr19:7559345 3.65E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g93 . . . . . . . . Cmo19g00731 Cmo11g01721 . . . . . . . . . . . . . . . . . . . . . Cone12ag1206 Cone8ag1258 . . . . . . . . Bda15g01046 . . . Bma03g00590 . . . . Cma11g01400 Cma19g00722 . Car19g00549 . . . . . . . . . . . . . . . . Lsi11g01177 . Chy01g00700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00731 Cmo_Chr19 FPKM 43.271152 45.37656 31.395363 30.574997 24.936985 32.112957 21.162848 9.007708 10.656607 11.488652