Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00737 ATGGAAAATGGGGTTAAGATTGCTCATGGCTTGGACGATGGAGAGAAGAAATTTGGGGAAGATGGTGTTTCATCGGATTGTGTAGATGAAACAGTTGTACTTGGTGCTCACGAATCTAGGGATTTGGAAGGGGAAGATGTTTTTGAGGAGGCTTTAGATGGGAAAGAGCATTTACTAGAGCAGAGTCCGAGGTATGGTTCGGTGAATGGTGATGTTGGAGAAGAAGAAATCAATGATTTTGTATCTGCGGTAACTTTGGACCACCCTAGTAGTGTTCACGATGAAGAGAAGTTTGAAGAGGCAATGGAGGCTTCTAGTGGGGTCGATGAAAACACGGTGGTAGATGGGCAAGATGTGAATTCTGAAAAGGAGAAGGAAGACTTGGGCGAGAAATTGGTCGACAATGTAGTTGTGGCTTCTAAGATTGATGAAAGAGGAATTAAAGAGGAAGCAGTGAACTCTGAGTTGAATGAGAGGAAGGATAATGAGTTGGACTGCGGTAGAGATGATTCGAGAAAGGAGACATCGGAGAACGGTGCTAGCCCGGAGGTTGAAGTGCTGAAGGGTGGGGATGAGGATGATTTGAAAAACGGTTTGATGAGTATGAAGTCTGAAAATGAAAATAGTGACGTTTTGAATGTGACTCCGCCTTCGAATGATGAACGGGTGAATAAGACTGCCGATATGGTAGGGGGGAGTAACCTGAATTCTTCCAGTGAGATCCCGACTGAGAACAGCAAGGACGTAGAATTGAATGAGAAAAGCTTAGGTACAGAGTCTATAGATCATGTTGAGAACACTGAGAAGCCATTAGTTGCACCCACTGTCCTTGATTTGGACAATCAAGATTATGTGAAGGCTGAGCTAAGGGATGATTCTCTTTGTGTGGATCTAGAACTGCCTGACAATGAGAGTGAAGAAATAAAAACGGCTACGACAGGTATTGATCCTAAGAACAATGATAATAAAGATGAAGAGAGCTCTGAGGAAGTGAAAGATGCTTCTACTGGGAAAGACACAGAAGTGCGGTCGAGAGAATCTCGGGGATTAAATGGCACTACTTCTGTTGATCAACATGAACCTGTGGGTGAAAATCGAATTTCTCTGGAGACGGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAGTTGAGAAGGCCCAGGGTGGTGAAAGTGATGTGACTGTGAAGGAAGATAATACATTAAGACAACAGCATCCTGTCGATAGTTCCAATAATGGCCTCGACACGGGAGGGCTTGAAAAGACGGAGAGTAAAGATAAGGTTGGACAGGACAGAACCCAAGTGAAAAGGGATCCAGAGATTCAACCTTCATCAATCATTGCTTCATCATCCGGAAAATCTACAAATCCCACTCCTCCTGCCCATCCAGCTGGTCTTGGGCGGGCTGCTCCATTGTTGGAACCTGCCCCTCGGGTGGTGCAGCCACCTCGAGTAAACGGTACTGTATCTCATGTTCAAATGCAACAAATTGATGATCATGTTAATGGGGATGCTGAGGAAAATGACGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGACTTGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGACTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCCTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCTGCTGGGCAGGAACCACTTGATTTTTCTTGTACGATCATGGTTCTTGGAAAGACAGGCGTGGGTAAAAGCGCTACCATCAACTCCATATTCGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTGGGAACTGTGCAGGGGATCAAAGTACGGGTCATCGACACTCCTGGTCTTCTTACCTCTTGGTCAGACCAGCGCCAGAATGAGAAGATCCTTCTCTCTGTTAAAAATTTTATAAAGAAGACGCCTCCAGATATTGTTTTGTATCTTGATAGGCTGGACATGCAAAGCCGAGATTTCAGTGACATGCCTCTCTTGCGTACAATTACTGAAATATTTGGACCATCTATATGGTTCAACGCAATTGTAGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGCACTGCTTCTAGTTACGATATGTTCGTCACTCAGCGATCTCATGTTGTACAGCAAGCCATACGCCAGGCTGCAGGGGATATGCGTCTTATGAATCCCGTCTCATTAGTGGAGAATCACTCTGCTTGCAGAACGAACAGAGCTGGGCAAAGGGTATTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTATTGCTCTCTTTTGCCTCGAAGATTTTGGCCGAAGCTAACACTCTTCTGAAGTTGCAAGATAGTCCTCCTGGGAGGCCATTTACTCCTCGGTCGAAGTCACCTCCTTTACCATTTCTTCTTTCTTCCCTTCTTCAATCCAGACCTCAAGTGAAACTGCCAGAGGAACAATTTGCTGATGATGATGGTCTTGAGGATGACCTTGATGAATCGTCAGATTCCGAAAATGAATCAGAATATGATGAATTGCCACCTTTTAAACGATTGAAAAAAGCACAGGTGGAGAAGCTCTCCAAAGAACAGAAGAAGGCCTACTTTGACGAGTTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAATGAGGAGGAAGATGTTGAAGAAAATGGCTGCCGAGGCAAAAGATCGACCTAGCAACTCTAGTGATAATGTAGAAGAAGATAGTGGTGCTGCTGCATCAGTACCAGTTCCCATGCCTGATTTGGCGTTACCTGCTTCCTTTGATTCTGATAATCCCACTCACCGGTATCGTTATCTCGATTCCTCTAACCAGTGGCTAATAAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTCGTCGTCAAAGACACAATACCCATCTCTTTTAGTGGTCAAGTTACCAAGGATAAGAAGGATGCAAATGTTCAAATCGAGATGAGTAGTACGATAAAGCATGGCGAAACTAAAGCGTCTTCTATCGGTTTTGATATGCAGACTGTTGGGAAGGATTTGGCCTATACATTACGTGGTGAGACAACATTTATTAATTTTAGAAAGAACAAGGCAATTGCTGGTCTGTCATTTGCCCTATTAGGCGATGCCTTGTCTGCAGGATTCAAAGTTGAAGATAAATTGATTGCTAATAAGCGATTTCGTTTAGTTGTGACTGGGGGTGCTATGACTGGTAGGGGAGATGTAGCTTATGGTGGCAGCCTGGAGGCTCAATTGAGAGATAAAGATTATCCGTTGGGTCGTTCCCTTTCGACTCTTGGGCTCTCGGTTATGGATTGGCATGGAGATCTTGCTATTGGTTGCAACATACAATCTCAAGTTCCCATTGGACGATCGACAAACCTAATTGGTCGTATGAATTTGAATAACAGGGGGGCAGGGCAAGTCAGTGTTCGGTTAAACAGCTCGGAACAGCTTCAGTTAGCTCTTGTTGGTCTCCTTCCTCTATTCAGAAAGCTTCTGGGTTGTTATCAACACTGGCAGGATGAACAATGA 3663 44.23 MENGVKIAHGLDDGEKKFGEDGVSSDCVDETVVLGAHESRDLEGEDVFEEALDGKEHLLEQSPRYGSVNGDVGEEEINDFVSAVTLDHPSSVHDEEKFEEAMEASSGVDENTVVDGQDVNSEKEKEDLGEKLVDNVVVASKIDERGIKEEAVNSELNERKDNELDCGRDDSRKETSENGASPEVEVLKGGDEDDLKNGLMSMKSENENSDVLNVTPPSNDERVNKTADMVGGSNLNSSSEIPTENSKDVELNEKSLGTESIDHVENTEKPLVAPTVLDLDNQDYVKAELRDDSLCVDLELPDNESEEIKTATTGIDPKNNDNKDEESSEEVKDASTGKDTEVRSRESRGLNGTTSVDQHEPVGENRISLETVKDISASEKIADEKVEKAQGGESDVTVKEDNTLRQQHPVDSSNNGLDTGGLEKTESKDKVGQDRTQVKRDPEIQPSSIIASSSGKSTNPTPPAHPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQMQQIDDHVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLTSWSDQRQNEKILLSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFADDDGLEDDLDESSDSENESEYDELPPFKRLKKAQVEKLSKEQKKAYFDELEYREKLFMKKQLKEEKMRRKMLKKMAAEAKDRPSNSSDNVEEDSGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMSSTIKHGETKASSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSFALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNLIGRMNLNNRGAGQVSVRLNSSEQLQLALVGLLPLFRKLLGCYQHWQDEQ 1220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7592431 7596093 - CmoCh19G007370.1 Cmo19g00737 403897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00737 1220 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 466 1213 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 201 222 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 407 421 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 186 200 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 923 947 - -
Cmo19g00737 1220 CDD Toc34_like 561 806 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 843 874 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 442 461 - -
Cmo19g00737 1220 ProSiteProfiles AIG1-type G domain profile. 586 815 IPR006703 GO:0005525
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 291 472 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 151 249 - -
Cmo19g00737 1220 Coils Coil 909 929 - -
Cmo19g00737 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 723 IPR027417 -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 229 245 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 847 867 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 151 179 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 318 346 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 347 361 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 376 406 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 422 441 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 1 24 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 99 128 - -
Cmo19g00737 1220 Gene3D - 558 806 IPR027417 -
Cmo19g00737 1220 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 378 1212 IPR045058 -
Cmo19g00737 1220 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 378 1212 - -
Cmo19g00737 1220 MobiDBLite consensus disorder prediction 291 311 - -
Cmo19g00737 1220 Pfam AIG1 family 589 722 IPR006703 GO:0005525
Cmo19g00737 1220 Pfam Translocase of chloroplast 159/132, membrane anchor domain 947 1210 IPR024283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00737 - - - csv:101205042 1947.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00331 Cmo-Chr1:1572545 Cmo19g00737 Cmo-Chr19:7592431 0 dispersed
Cmo11g01735 Cmo-Chr11:12271775 Cmo19g00737 Cmo-Chr19:7592431 0 dispersed
Cmo12g01215 Cmo-Chr12:10849874 Cmo19g00737 Cmo-Chr19:7592431 1.13E-173 dispersed
Cmo16g01284 Cmo-Chr16:9153773 Cmo19g00737 Cmo-Chr19:7592431 3.85E-32 dispersed
Cmo19g00737 Cmo-Chr19:7592431 Cmo14g00924 Cmo-Chr14:4884291 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00737 Cmo_Chr19 FPKM 17.994062 18.058495 56.288204 55.895561 3.834723 3.828019 2.809799 0.484534 0.419582 0.426971