Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00742 GCGCGTGGCGGTTCATGGCCAAAGGATGAGCTTTGGAGGTCGCATTATCAAATTGGGAGCAGATTTTTGCGAAGTTCGAGGTATCCTCTCTACTGTACGAAGCAACGCCTTTCGTTTTGCTGCTCTGTAATGGCGTTACCGGTCGTAGATACAGAGTACCTTAAGGAGATCGATAAGGCTCGCCGTCACCTCCGCTCTCTCATTGCCAACCGGAACTGTGCACCGATCATGCTTCGTCTGGCTTGGCACGACGCTGGCACGTACGATGTGAGTACGAAAACTGGAGGGCCTAATGGTTCGATTAGGAACGCGGAGGAGTATTCTCACGGGTCTAACAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTATAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGTGTTGTTGCTGTCGAGGTCACTGGAGGCCCGACTATTGACTTTGTTCCTGGTAGAAAGGATTCGAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCTAAAAAAGGTGCACCGCATCTGCGTGACATCTTTTATAGGATGGGTCTGTCTGACAAAGATATTGTTGCATTGTCTGGGGGTCACACTTTGGGAAGAGCACATCCGGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGATCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTGTTGAAAGGTGAATCAGAGGGACTATTAAAACTTCCCACGGACAAGGCTTTACTTGAAGATCCTGAATTCCGCCAATATGTGGAATTGTATGCAAAAGATGAAGATGTATTCTTCCAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGCTAAACCAATTGTGAAGGACAGCACAGTATTGGCTCAGGGTGCCGTTGGAGCCGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTACTTATACGAAATTCGCAAAAAATCGAAGTAA 990 46.87 ARGGSWPKDELWRSHYQIGSRFLRSSRYPLYCTKQRLSFCCSVMALPVVDTEYLKEIDKARRHLRSLIANRNCAPIMLRLAWHDAGTYDVSTKTGGPNGSIRNAEEYSHGSNNGLKKAIDFCEEVKYKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRQYVELYAKDEDVFFQDYAESHKKLSELGFTPGSAKPIVKDSTVLAQGAVGAAVAAAVVILSYLYEIRKKSK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7621692 7625868 - CmoCh19G007420.1 Cmo19g00742 403902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00742 329 Gene3D - 60 286 - -
Cmo19g00742 329 PRINTS Haem peroxidase superfamily signature 150 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Haem peroxidase superfamily signature 74 88 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Haem peroxidase superfamily signature 132 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 CDD ascorbate_peroxidase 47 289 - -
Cmo19g00742 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Cmo19g00742 329 Gene3D Peroxidase, domain 2 173 279 - -
Cmo19g00742 329 Pfam Peroxidase 63 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 ProSitePatterns Peroxidases active site signature. 74 85 IPR019794 GO:0004601
Cmo19g00742 329 PANTHER L-ASCORBATE PEROXIDASE 4, PEROXISOMAL-RELATED 44 329 - -
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 171 188 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 92 102 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 131 149 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 211 235 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 263 287 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 106 130 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 189 210 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 74 89 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 53 73 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PRINTS Plant ascorbate peroxidase signature 150 162 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 ProSiteProfiles Plant heme peroxidase family profile. 74 303 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 SUPERFAMILY Heme-dependent peroxidases 53 293 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo19g00742 329 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 44 329 IPR044831 GO:0004601|GO:0034599
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00742 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101206941 527.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00697 Cmo-Chr3:6074801 Cmo19g00742 Cmo-Chr19:7621692 4.16E-142 dispersed
Cmo11g01730 Cmo-Chr11:12233701 Cmo19g00742 Cmo-Chr19:7621692 0 dispersed
Cmo12g00288 Cmo-Chr12:1827663 Cmo19g00742 Cmo-Chr19:7621692 4.31E-39 dispersed
Cmo13g00167 Cmo-Chr13:1079520 Cmo19g00742 Cmo-Chr19:7621692 1.39E-113 dispersed
Cmo15g00678 Cmo-Chr15:3322128 Cmo19g00742 Cmo-Chr19:7621692 3.15E-77 dispersed
Cmo19g00742 Cmo-Chr19:7621692 Cmo20g00491 Cmo-Chr20:2304630 9.49E-107 dispersed
Cmo19g00742 Cmo-Chr19:7621692 Cmo01g00583 Cmo-Chr1:2957431 2.57E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00742 Cmo_Chr19 FPKM 1.23964 1.419071 2.891024 3.032297 9.29952 7.364029 8.102381 3.930719 4.101207 5.240889