Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00747 ATGGAGGACGGAGAGCTTGATTTTTCGAATCAGGAAGTGTTTTCGAGTCCAAATATGGAGATTCCGAGCAGTTGTTCAATGGATGGTTTCTTTGATGAACTTCTGAAGGACACTCATACTTGTACTCACACGCATACTTGCAATCCACCGGGCCCTGACTACTCTCATACTCACACATGTTTTCATGTCCACACTAAGATTGTCCCTGCTCCAAGTGAAGAAGACAAGGTTGTTACTGATGACACGGCGGAATCGACCGAGAAGAAATCGAAGAAACGGCCGTTGGGTAACCGTGAAGCTGTTCGTAAGTACCGGGAGAAGAAGAAGGCTAGGGCAGCTTCATTAGAGGACGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGGTGAAGAGGTTGCAGGGGCAGGCAGCACTTGAGGCTGAGGTTGCTAGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCTTTCCCATATCAGAAAGCTGTTAATCCTAACTTGGCTAATCCAAGCATCCCTGGTGCTTATTTGATGAACCCGTGTAATGTCCGGTGTGAGAATGATCAGATTTACTGCCTCCATCCAGGGGTCGATGGTAGCAGAAGCAGTGAAGGTGCTGTGATAAATGGACAGAGTTTTGGTGCTTGTGAATTTGAAAATCTTCAATGTTTGGCTAGTCATGGCTTGACATCAGAAGAGCTACCCGGGTGTGGACTACGGAACGCTGTCTCGAACGATATTTCTTCAGGAGCAATGAAGAAGAAAGGTAAAAACTGA 798 46.24 MEDGELDFSNQEVFSSPNMEIPSSCSMDGFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPSEEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLVKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLANPSIPGAYLMNPCNVRCENDQIYCLHPGVDGSRSSEGAVINGQSFGACEFENLQCLASHGLTSEELPGCGLRNAVSNDISSGAMKKKGKN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7647003 7647800 + CmoCh19G007470.1 Cmo19g00747 403907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00747 265 Coils Coil 98 132 - -
Cmo19g00747 265 MobiDBLite consensus disorder prediction 73 97 - -
Cmo19g00747 265 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cmo19g00747 265 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 242 - -
Cmo19g00747 265 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700|GO:0006355
Cmo19g00747 265 Gene3D - 75 153 - -
Cmo19g00747 265 PANTHER BASIC LEUCINE ZIPPER 23 1 242 - -
Cmo19g00747 265 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Cmo19g00747 265 CDD bZIP 91 144 - -
Cmo19g00747 265 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo19g00747 Cmo20g00745 CCT
Cmo02g00256 Cmo19g00747 CCT
Cmo11g01739 Cmo19g00747 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01739 Cmo-Chr11:12283825 Cmo19g00747 Cmo-Chr19:7647003 3.71E-155 wgd
Cmo19g00747 Cmo-Chr19:7647003 Cmo02g00256 Cmo-Chr2:1232286 5.08E-134 wgd
Cmo19g00747 Cmo-Chr19:7647003 Cmo20g00745 Cmo-Chr20:3731642 6.24E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11646 PF07716 bZIP_2 7.40E-14 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00747 K25785 - csv:101208161 478.404