Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00753 ATGTCGAAAGAGGTGACGGAAGAGGGACAGTCCAGCTTGAGAAAGGACTACGTCGACCCACCGCCGGCGCCGCTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTTTACAGAGCTCTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAGCAAACAGACCAAAATGTGCGACGGCGTCGGAATCCTCGGCATTGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGAATTTCCGGCGGTCATATCAATCCGGCTGTTACATTCGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCGTCGTCGGCGTCGGATTAGTTAAAGCTTTCATGAAACATGATTACAACAACAACGGCGGCGGAGCAAACGCCGTTAATTCTGGTTACAGTAGGGGAACAGCTCTCGGTGCTGAGATAATCGGAACGTTTGTTCTTGTTTACACCGTTTTCTCTGCTACTGACCCCAAAAGAAGCGCGCGTGACTCTCACATCCCTGTTTTGGCGCCATTGCCGATCGGCTTCGCCGTGTTCATGGTTCATTTAGCCACCATTCCCATCACCGGAACCGGAATCAACCCGGCTAGAAGCTTCGGCGCCGCCGTGATCTACAACCGTGAAAAACCCTGGAACGACCATTGGATCTTCTGGGTGGGTCCGTTCGTCGGAGCACTGGCGGCAGCGGCGTACCACCAGTACATTCTCCGAGCAGCCGCCATTAAAGCGTTGGGATCATTCCGCAGCAACCCGACCAACTGA 843 56.47 MSKEVTEEGQSSLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNSKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAVVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7683024 7684429 + CmoCh19G007530.1 Cmo19g00753 403913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00753 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cmo19g00753 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
Cmo19g00753 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cmo19g00753 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Cmo19g00753 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cmo19g00753 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo19g00753 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01746 Cmo19g00753 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00971 Cmo-Chr7:4762813 Cmo19g00753 Cmo-Chr19:7683024 1.72E-144 dispersed
Cmo19g00753 Cmo-Chr19:7683024 Cmo03g01239 Cmo-Chr3:9556212 4.85E-156 dispersed
Cmo11g01746 Cmo-Chr11:12320740 Cmo19g00753 Cmo-Chr19:7683024 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00753 K09872 - csv:101209627 539.265