Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00756 ATGCAAAGCCTGATGGAGAGACTAAGACCCCTTGTGGGTAGTAAAAGCTGGGACTATTGTGTTCTATGGAAATTGAGCCAAGATCAGAGATGTGTTGAATGGATGGACTGCTGTTGTGCTGGGACTGAGAATGGGCAAAATGGTGGAGAAGAACTTGGGTTTCCTGTTTCTCAAGTCATTCCATGTAGGGACACTGCATATCCACACCCAAGAGCCAGTTCCTGTGATCTTCTTGCTCAGCTGCCATGTTCTGTGCCTCTAAATTCTGGGGTTTACATACAGACACTGCTATCAAATGAACCCAAATGGCTACTCTTCTCCAATGCCATGGATTCAACTGCACTGGATGAAACAGCGGGAACCAGGGTGTTAATTCCATTTCCATTCGGACTTGTGGAGCTGTTCGTCGCTAAACATGCATCTGAAGATCAGCATGTCATAGATTTTGTAACAATTCAATGCAGCATTTCTGTTGAGCAAGAAGCCATTATTAATTCAAGCAACATGGATACAAGTTTCTCTGTTGATGTAAATGCAACAAACGAAATCCAATCAAAACCGTTTGTAGCGGATCGGAATGCTGTTCTAAAAGATCCTGAAATTCAATTTGAGGCACCAGGTTCAGCCGCACCAACATTAGAAAACGCCAATGTGGGTTATGATATCTCATTAGACAGAATCCGCCTCTGCAGTTCTCCTATGAATTTCTTGCAACAGTTCAATTATAGCTCAGAAAACAGAAATAAGAATGAAATTTTCAATGAATGCTCACAGGATTCATTCCTTACGGATAAGCAGGGAAACCCTTACAAGTTTTCAGCTGAAAATGAGTTCCAAGAGGTGGATACGATGCAGGGGTCCTTAATGAACACATCAAACATTCATGTGCAGTTAAAGGAGAACAGTGAATGCAAAGAGCAGCAAGGGGAGGAAAAAGACTTGGTCAAACATGAAAATGGAAGGTCTGATTCAATCTCCGATTGCAGTGATCAGATCGATGACGAAGATGATGCAATCGCAAAGTATCGCCGGAGGACTGGGCAGGGTCCTCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGAAAGAAACTCAATGAGCGGCTGTATAATCTCCGAGCATTGGTTCCCAAAATTTCTAAGATGGATAAAGCCTCAATACTTGGTGATGCAATTGATTTTGTGAAGGAGTTGCAAAAGCAAGTCAAGGAACTCCAAGATGAACTGGAAGAACATACAGATGATGAAAACGGTAAAACTGTAGTTTCAGGAAACAATGGAAACCAAAATAGTGTCCAGCTACCTGAGTTTCTGAGCCAAAATGATAAAGCTCAAAACAATTACCATATGGGAGTACTGGGAAGTGGAAGTGTTTTGAAGCAAAATCATCAGGACACTGAAGGTACTAACAATGACAAGACACAACAGATGGAGCCGCAAGTGGAAGTGGCTCAGATTGATGGGAACGAGTTCTTTGTGAAGGTTTTCTGCGAGAACAAGCGAGGTGGATTTATGAGGTTAATGGAGGCCTTAAATGCTCTTGGCTTGGAAGTAACAAATGCAAATGTGACCAGCTATAGAGGCCTCGTATCTAATGTTTTCAAAGTTGGGAAGAAGGACAGTGAAATGGTTCAAGCGGATGATGTAAGAGACTCTTTGCTGGAGATAACAAAGTACCCATGCAGAGGGTGGGCAGAAATAGTCAAGGCACCAGAATGCATTGGAAGCCGCATGGAGCCCAACCCCCATCCCCACCCCCACCAGCACCAGACCCAGAATCCATTTCAAGACAAAGCTATCATCAATTCACGCCTCCATCTCCTTAATGATTAA 1833 43.04 MQSLMERLRPLVGSKSWDYCVLWKLSQDQRCVEWMDCCCAGTENGQNGGEELGFPVSQVIPCRDTAYPHPRASSCDLLAQLPCSVPLNSGVYIQTLLSNEPKWLLFSNAMDSTALDETAGTRVLIPFPFGLVELFVAKHASEDQHVIDFVTIQCSISVEQEAIINSSNMDTSFSVDVNATNEIQSKPFVADRNAVLKDPEIQFEAPGSAAPTLENANVGYDISLDRIRLCSSPMNFLQQFNYSSENRNKNEIFNECSQDSFLTDKQGNPYKFSAENEFQEVDTMQGSLMNTSNIHVQLKENSECKEQQGEEKDLVKHENGRSDSISDCSDQIDDEDDAIAKYRRRTGQGPQSKNLVAERKRRKKLNERLYNLRALVPKISKMDKASILGDAIDFVKELQKQVKELQDELEEHTDDENGKTVVSGNNGNQNSVQLPEFLSQNDKAQNNYHMGVLGSGSVLKQNHQDTEGTNNDKTQQMEPQVEVAQIDGNEFFVKVFCENKRGGFMRLMEALNALGLEVTNANVTSYRGLVSNVFKVGKKDSEMVQADDVRDSLLEITKYPCRGWAEIVKAPECIGSRMEPNPHPHPHQHQTQNPFQDKAIINSRLHLLND 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7694317 7697983 + CmoCh19G007560.1 Cmo19g00756 403916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00756 610 Pfam Helix-loop-helix DNA-binding domain 356 399 IPR011598 GO:0046983
Cmo19g00756 610 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 87 564 - -
Cmo19g00756 610 MobiDBLite consensus disorder prediction 419 433 - -
Cmo19g00756 610 MobiDBLite consensus disorder prediction 302 328 - -
Cmo19g00756 610 MobiDBLite consensus disorder prediction 302 333 - -
Cmo19g00756 610 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 412 IPR036638 GO:0046983
Cmo19g00756 610 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 87 564 - -
Cmo19g00756 610 CDD bHLH_AtAMS_like 352 420 - -
Cmo19g00756 610 MobiDBLite consensus disorder prediction 576 596 - -
Cmo19g00756 610 Coils Coil 388 415 - -
Cmo19g00756 610 Gene3D - 343 415 IPR036638 GO:0046983
Cmo19g00756 610 MobiDBLite consensus disorder prediction 407 433 - -
Cmo19g00756 610 SMART finulus 355 404 IPR011598 GO:0046983
Cmo19g00756 610 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 4 150 IPR025610 -
Cmo19g00756 610 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Cmo19g00756 610 CDD ACT_UUR-ACR-like 493 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00756 - - - cmos:111435148 1038.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01748 Cmo19g00756 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00920 Cmo-Chr12:8471988 Cmo19g00756 Cmo-Chr19:7694317 2.43E-18 dispersed
Cmo19g00756 Cmo-Chr19:7694317 Cmo14g00777 Cmo-Chr14:3943672 1.80E-25 dispersed
Cmo20g00557 Cmo-Chr20:2692440 Cmo19g00756 Cmo-Chr19:7694317 5.62E-17 dispersed
Cmo04g01817 Cmo-Chr4:9155398 Cmo19g00756 Cmo-Chr19:7694317 9.54E-13 transposed
Cmo11g01748 Cmo-Chr11:12328919 Cmo19g00756 Cmo-Chr19:7694317 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11647 PF14215 bHLH-MYC_N 2.10E-17 CL0161 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00756 Cmo_Chr19 FPKM 20.649717 20.793566 41.125198 38.930565 20.459099 20.144821 22.425663 39.980652 47.175377 47.383606