Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00757 ATGACGCAAGACGCTGAGATGAAGGAGCTTCCTCCTCCCATTTCTTCTTCTGCTGCTCCAACTTCTCCTTCAACGTTACAACATTTGAAAGAGATTGTGTCGCTTCTTGAAACCGGTGCGTATGCACGGGAAGTCCGGCGAATCGTTCGAGCTATTCGTCTGACTATGGCGTTGAGGCAGAAATTGAAGGCGTCTGTTCTTTCTCCATTTCTGAATTTTGCTCTCCCGCCAGGATCCGATGTGCACACAAGGTTATCATCATTTATTCCGAAGGAGGATGACTACGAAATGGATATTGACTCGGAAACAAAGGCATTAACTCAGGCACCTGTAAAACATCCCTTACCTGAGATAGAGATTTTCTGCTATTTGCTTTTGCTAGTATTTCTGATTGATCAGAAGAAATATGGCGAGGCTAAGGCTTGTGCTTCAGCTAGCATTGCCCGATTGAAGAACTTGAATAGAAGAACGGTTGATGTGCTATCATCTAGGCTTTACTTTTATTACTCGCTTAGCTACGAACTCACTGGTGATCTTGCGGAAATAAGAGGTAACCTCCTGGCCCTGCATCGCATTGCAACGTTACGCCATGATGAATTGGGTCAGGAAACCCTCCTCAACCTACTACTTCGAAATTACCTCCATTACAATCTTTACGATCAAGCAGAGAAGTTGAGGTCCAAGGCACCCCGATTTGAAGCTCACTCAAACCAGCAGTTCTGTAGGTACCTATTTTACCTAGGCAAGATCAGGACCATTCAGCTGGAATATACAGATGCGAAGGAGTCTCTTCTACAAGCTGCCCGAAAAGCACCTATCGCAGCGCTTGGTTTTCGAGTACAATGCAACAAATGGGCAATCATTGTTCGCTTATTGTTAGGAGAAATCCCTGAGAGGACTGTTTTTATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGCGACTTGGAGCTTTTCAGAACTGTTGCTGATAAGTTCTCTAGTACTTTCAGCTCAGATCGAACCAACAATTTGATCGTGAGGCTGCGACATAATGTAATCAGAACTGGGCTGCGCAACATTAGCATATCATATTCGCGCATTTCTCTGGCTGATATTGCTAAAAAGCTGAGACTGGACTCTGAAAATCCCATTGCTGATGCTGAGAGTATCGTCTCTAAGGCAATCCGAGATGGAGCAATTGATGCCACGGTTGATCACGCGAAGGGATGGATGGTATCCAAGGAGACTGGAGACATCTACTCTACCAATGAGCCTCAAATTGCCTTCAACTCAAGGATTGCATTCTGCCTGAATATGCACAATGAGGCAGTTCGTGCTCTCAGGTTCCCACCAAACTCCCACAAAGAAAAGGAAAGTGCTGAGAAAAGGAGAGAAAGACAGCAGCAGGAGCAAGAACTTGCTAAGCATATAGCCGAAGAAGACGATGACGACTTTTAA 1470 45.03 MTQDAEMKELPPPISSSAAPTSPSTLQHLKEIVSLLETGAYAREVRRIVRAIRLTMALRQKLKASVLSPFLNFALPPGSDVHTRLSSFIPKEDDYEMDIDSETKALTQAPVKHPLPEIEIFCYLLLLVFLIDQKKYGEAKACASASIARLKNLNRRTVDVLSSRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVADKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDSENPIADAESIVSKAIRDGAIDATVDHAKGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7699578 7702890 - CmoCh19G007570.1 Cmo19g00757 403917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00757 489 Gene3D - 254 440 - -
Cmo19g00757 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 1 489 - -
Cmo19g00757 489 SUPERFAMILY Winged helix DNA-binding domain 349 423 IPR036390 -
Cmo19g00757 489 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00757 489 ProSiteProfiles PCI domain profile. 241 422 IPR000717 -
Cmo19g00757 489 SMART PINT_4 347 440 IPR000717 -
Cmo19g00757 489 MobiDBLite consensus disorder prediction 453 482 - -
Cmo19g00757 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 489 - -
Cmo19g00757 489 Coils Coil 456 483 - -
Cmo19g00757 489 MobiDBLite consensus disorder prediction 453 489 - -
Cmo19g00757 489 Pfam Proteasome regulatory subunit C-terminal 422 488 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cmo19g00757 489 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 347 440 - -
Cmo19g00757 489 Pfam PCI domain 313 418 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00757 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - csv:101210117 821.617
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01750 Cmo19g00757 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00926 Cmo-Chr8:6039125 Cmo19g00757 Cmo-Chr19:7699578 0 dispersed
Cmo17g00037 Cmo-Chr17:178120 Cmo19g00757 Cmo-Chr19:7699578 5.49E-23 dispersed
Cmo11g01750 Cmo-Chr11:12337468 Cmo19g00757 Cmo-Chr19:7699578 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g179 . . . . . Bpe12g00127 . . Cmo19g00757 Cmo11g01750 . . . . . Cpe04g00602 Cpe15g00601 Bhi05g01695 Tan02g0667 . . Hepe02g0415 . . Cla02g00415 Cam02g0425 Cec02g0423 Cco02g0441 Clacu02g0426 Cmu02g0421 Cre02g0755 . . . . . Csa07g00112 . Cme01g01250 . Blo13g00498 Bda15g01028 . . . . Bma08g00613 . . . Cma11g01368 . . Car19g00576 . . . . . . . . . . . . . . . . . . Chy01g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00757 Cmo_Chr19 FPKM 15.153406 17.731489 61.159603 62.061344 23.150087 22.420427 24.080343 88.296661 82.041283 86.634659