Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00761 ATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAAGGACAGAAAGTGAAGGAAACTGCCAATGGCGGCGATGCAGAAATGAAGTCTGGAGACAAACATCGTAGTCGAAGTTCAAAGTATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACTTGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGGCATAGTAGTGGTAAAGAGTTTAGGGGAAAAGAGGACAGAGAAAAGAATCAGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGACAGAGATAAAGAACGTGTGCACGATCATGATAGACGAGGCAGAGATGGTGAAAAGGACAGGGAAAGAGAACGGTCACATCGAAGTAGAAGTCATTCAGAAAGACATCGCAGTGATCGAGATGAAAGCATTAGACAGAGGACCCGAGATAATGAATTCAGAGAACGAGAAAAAGAGAGAGAGTCTAGAGAGCGAGGCAGGGATGGCAGAAGACATAAGGAGAAAAAGGAAGACGGAACAGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTGAAGGCAACTGAAAGAGATGTGTTCGAATTCTTCTCCAGGGCCGGTAAGGTGTTGGGGAAGGTGGTTTTCTCAAGACAGGTGCGAGATGTACGCCTCATCATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTAAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAACCAAGCTCAATCAACTTCTGCTGCTGCTGGACCAGGTGGAGTAATGGGTCCCTACACTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCATTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGGCATTGCAAGGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCATTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAATGATAAAGGTGTCCACAGTCACAGATCAGCCTGGACTGCAAGATATTGGAGCAAGTACAGGAGACCTTGACGATGAAGATGGTGTTGGCTTGTCCTTAAATGCTAGTTCTCGAGCATCCCTGATGCAGAAACTGGACCGTACTGGCACTGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTACCATGGCAATGGCGCCAATCCTTGGAGTTGGAACTATCCCTTCCCTAGGTGTTGCTACTTCTTTGGTCTCCGTCCCTGCTTTTCCTGGACTTGGTGCAGCAGGCGTTCAGGTTCCCACTGTTGCTGCTAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTTGGAACCCACTTTTGATATGGATATCAGAGACGACGTGGAAGAGGAATGCTCTAGGAATAGTGCCGGTTTTGTATACTTGAGATTTGCAAATTCAGAGGCTGCAATGGATGCACAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGCGCAACTTTCATGAAATTGGACTTGCAGCCTAAGCATCAGATCTGCAAGAATCCTGCCTCTGGGCAGTACAGAAAAGATGGCTTGCATCTGCTTGCCATATCTTCCAAATTTATTTAA 1848 45.51 MDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVLGKVVFSRQVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMKLDLQPKHQICKNPASGQYRKDGLHLLAISSKFI 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7715719 7726215 - CmoCh19G007610.1 Cmo19g00761 403921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00761 615 CDD RRM1_RBM39_like 210 292 - -
Cmo19g00761 615 Gene3D - 202 303 IPR012677 -
Cmo19g00761 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 296 IPR000504 GO:0003723
Cmo19g00761 615 TIGRFAM SF-CC1: splicing factor, CC1-like family 82 585 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cmo19g00761 615 CDD RRM3_RBM39_like 510 581 - -
Cmo19g00761 615 Gene3D - 507 595 IPR012677 -
Cmo19g00761 615 SUPERFAMILY RNA-binding domain, RBD 322 580 IPR035979 GO:0003676
Cmo19g00761 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Cmo19g00761 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 287 IPR000504 GO:0003723
Cmo19g00761 615 MobiDBLite consensus disorder prediction 1 208 - -
Cmo19g00761 615 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 529 IPR029123 -
Cmo19g00761 615 Gene3D - 304 402 IPR012677 -
Cmo19g00761 615 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 583 - -
Cmo19g00761 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Cmo19g00761 615 SUPERFAMILY RNA-binding domain, RBD 202 319 IPR035979 GO:0003676
Cmo19g00761 615 SMART rrm1_1 210 292 IPR000504 GO:0003723
Cmo19g00761 615 SMART rrm1_1 512 579 IPR000504 GO:0003723
Cmo19g00761 615 SMART rrm1_1 323 395 IPR000504 GO:0003723
Cmo19g00761 615 PANTHER CC1-LIKE SPLICING FACTOR 1 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00761 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01061 Cmo-Chr3:7900300 Cmo19g00761 Cmo-Chr19:7715719 2.52E-127 dispersed
Cmo06g01239 Cmo-Chr6:9357443 Cmo19g00761 Cmo-Chr19:7715719 1.85E-08 dispersed
Cmo14g01961 Cmo-Chr14:14473402 Cmo19g00761 Cmo-Chr19:7715719 1.98E-08 dispersed
Cmo19g00761 Cmo-Chr19:7715719 Cmo18g00277 Cmo-Chr18:1827056 1.09E-13 dispersed
Cmo19g00761 Cmo-Chr19:7715719 Cmo07g00800 Cmo-Chr7:3669011 6.82E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g184 . . . . . . . . Cmo19g00761 . . . . . . . Cpe15g00604 Bhi05g01690 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00295 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01213 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00761 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 11.174836 13.206221 9.467935 0.0 0.0 0.0