Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00774 ATGGATAATATTGGTAGCAAAGACTCCAAATTGAAGATAGAAGAAGAAGAAAACAATGATATCAAAGTCCAAGTATGGAAATACATATTTGGTTTCGTTGAAATGGCAGTCATAAAATGTGCCATAGAGCTCAAAATTGGCGACACAATCGAAGCCCATGGAGGCCTCATGACACTCACCGACCTATCATCTTCCTTAAATTGCTCTCCATTGCTTCTACACCGCATCCTACGCTTCCTCATCCATCGAGGAATTTTCAAAGAAGAGCCCACCAAAAGCTACGCCCAAACGCCCATGTCCCGGCTGCTCACAAGCAGTGGGGCGCACAGCTTGGCTCCCATGCATGTGTTAGAGAGCAGCCATGTGATGTTGGCGCCATGGCACAACTTGAGTGCATATCTCAAAGCCAATGATGGGGGGAGTCAGCCATTTGAGATGGCTCATGGGAAGGACTTGTGGAGGTATTGTGCAGCCAATTCGTCGCATAATAAGGTGATGAATGAGGGCATGGCTTCCTTTGCTCGGGTGGTTATTGTGCCGGCTGTATTGGAAAGGTGTGGAGGGGTTTTTGAGGGAGTTGGAAGTTTGGTGGATGTTGGAGGAGGAAATGGGAGTTGTTTGAGTGTTTTGGTGAAGGCTTTTCCTTGGATTAGAGGTATTAATTTTGATCTTCCACATGTTGTGTCTGTTTCACAAGAGTACGAGGGTGTTCGACATGTTGGTGGGAATATGTTCGATTTTGTCCCGAAGGCTGATGCTGCTTTCATCATGAATGCTCTACACGATTGGGACGACGAAGATTGCATCAAAATTTTGAAGAATTGCAAAGAAGCGATCCCCGAAAAAACAGGTAAAGTGATCATTGTTGAAGTGGTCATTGACGAAAAGGACGAAAGCATGGTGTCCGATATAAGGTTGATGTTGGATATGATAATGATGGCTCATACTATCAAGGGAAAAGAAAGAACTCGAGAGGAATGGGCATATGTTCTTCAGCAGGCTGGTTTTAGTCGACATACCATCACTCCTACTTCTACTATCCAATCTATCATTCAAGGTTTCGTTTGA 1068 44.57 MDNIGSKDSKLKIEEEENNDIKVQVWKYIFGFVEMAVIKCAIELKIGDTIEAHGGLMTLTDLSSSLNCSPLLLHRILRFLIHRGIFKEEPTKSYAQTPMSRLLTSSGAHSLAPMHVLESSHVMLAPWHNLSAYLKANDGGSQPFEMAHGKDLWRYCAANSSHNKVMNEGMASFARVVIVPAVLERCGGVFEGVGSLVDVGGGNGSCLSVLVKAFPWIRGINFDLPHVVSVSQEYEGVRHVGGNMFDFVPKADAAFIMNALHDWDDEDCIKILKNCKEAIPEKTGKVIIVEVVIDEKDESMVSDIRLMLDMIMMAHTIKGKERTREEWAYVLQQAGFSRHTITPTSTIQSIIQGFV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7813626 7815886 - CmoCh19G007740.1 Cmo19g00774 403934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00774 355 Gene3D - 8 103 IPR036388 -
Cmo19g00774 355 PANTHER O-METHYLTRANSFERASE 11 347 IPR016461 GO:0008168
Cmo19g00774 355 PIRSF O-mtase 3 355 IPR016461 GO:0008168
Cmo19g00774 355 Gene3D Vaccinia Virus protein VP39 105 354 IPR029063 -
Cmo19g00774 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 351 IPR029063 -
Cmo19g00774 355 Pfam Dimerisation domain 37 80 IPR012967 GO:0046983
Cmo19g00774 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 355 IPR016461 GO:0008168
Cmo19g00774 355 SUPERFAMILY Winged helix DNA-binding domain 19 106 IPR036390 -
Cmo19g00774 355 Pfam O-methyltransferase domain 127 337 IPR001077 GO:0008171
Cmo19g00774 355 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 11 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00774 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101211054 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00774 Cmo-Chr19:7813626 Cmo19g00778 Cmo-Chr19:7832846 0 dispersed
Cmo19g00773 Cmo-Chr19:7808684 Cmo19g00774 Cmo-Chr19:7813626 3.07E-159 tandem
Cmo19g00774 Cmo-Chr19:7813626 Cmo19g00775 Cmo-Chr19:7817493 3.95E-144 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00774 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0