Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00776 ATGGACTTCGCTTTGAAACAATCCATTTCAAAGAAGGAAGAACATGAACACGCTCGTCTTCAAGTTTGGCAATACATATTTGGTTTCGTTGAAATGGCAATCATAAAATGTGCTATAGAACTCAAAATTGGTGACACAATCGATAGCCATGGAGGCCTCATGACACTCCCCGAGCTATCATCTTCTTTAAATTGTTCTTCCTCACTCCTATACCGCATCATGCGATTCTTGGTTCATCGAGGAATTTTCAAAGAAGAACCCACAAAAGGCTACGCTCAAACGCCCATGTCTCGGCTGCTTGCCAGTAGCAGCGGCAGCAGCATGGCTCCACTTCTTCTATTCGAGAGCAACCCAGTGATGCTCGCACCATGGCATGGCCTCAGCGCGCGAATTAAAGGCAATGAAGCCATACCATTTGAGGCTGCTCATGGCAAAGATATGTGGAGCTATGCAGCAGCTAACCCAACACACAATGCAATGTTCAATGATGCTATGGCATGCTCTGCGAGGGTGATGAGTGTGCCTGCAATACTTGAAGATTGTGGAGAGATTTTTGAAGGAGTTGAGTGTTTAGTGGATGTGGGTGGAGGGAATGGTACAAGCTTGAGCATGATAGTGAAGGCTTGCCCATGGATTAAAGCCATCAACTTTGACCTTCCACATGTCATTGCTTCTTTACCAGCAGACATTGATGTACAACATGTTGGTGGCAATATGTTTGATTCCATCCCTAAGGCTGATGCTGCTTTCCTCATGTGGGTTCTACATGACTGGGATGATGAGACATGCATCAAAATTTTGAAGAATTGCAGAGAAGCAATCCCAAAAAAGACAGGAAAAGTGATAATTGTAGAAGCAGTTCTCGAAGAAAAAGAAGAAAATAATCTGTCGGATGTGGGATTAATGCTAGACATGGTGATGATGGCTCATACCAACGACGGCAAGGAAAGAACAGCTAAAGAATGGGCTTATGTCCTTCATCAGGCTGGTTTTACTCGACACACCATTACTCCCATTCGAGCTCTTCAATCTGTCATTCAAGCCTTCCCTTGA 1053 44.35 MDFALKQSISKKEEHEHARLQVWQYIFGFVEMAIIKCAIELKIGDTIDSHGGLMTLPELSSSLNCSSSLLYRIMRFLVHRGIFKEEPTKGYAQTPMSRLLASSSGSSMAPLLLFESNPVMLAPWHGLSARIKGNEAIPFEAAHGKDMWSYAAANPTHNAMFNDAMACSARVMSVPAILEDCGEIFEGVECLVDVGGGNGTSLSMIVKACPWIKAINFDLPHVIASLPADIDVQHVGGNMFDSIPKADAAFLMWVLHDWDDETCIKILKNCREAIPKKTGKVIIVEAVLEEKEENNLSDVGLMLDMVMMAHTNDGKERTAKEWAYVLHQAGFTRHTITPIRALQSVIQAFP 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7821992 7824428 - CmoCh19G007760.1 Cmo19g00776 403936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00776 350 Pfam Dimerisation domain 34 78 IPR012967 GO:0046983
Cmo19g00776 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 105 346 IPR029063 -
Cmo19g00776 350 PANTHER O-METHYLTRANSFERASE 7 348 IPR016461 GO:0008168
Cmo19g00776 350 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 7 348 - -
Cmo19g00776 350 Gene3D Vaccinia Virus protein VP39 102 350 IPR029063 -
Cmo19g00776 350 SUPERFAMILY Winged helix DNA-binding domain 12 104 IPR036390 -
Cmo19g00776 350 PIRSF O-mtase 1 350 IPR016461 GO:0008168
Cmo19g00776 350 Pfam O-methyltransferase domain 124 331 IPR001077 GO:0008171
Cmo19g00776 350 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 350 IPR016461 GO:0008168
Cmo19g00776 350 Gene3D - 4 100 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00776 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101218114 521.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01762 Cmo19g00776 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00776 Cmo-Chr19:7821992 Cmo19g00778 Cmo-Chr19:7832846 0 dispersed
Cmo19g00775 Cmo-Chr19:7817493 Cmo19g00776 Cmo-Chr19:7821992 0 tandem
Cmo19g00776 Cmo-Chr19:7821992 Cmo19g00777 Cmo-Chr19:7827425 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00776 Cmo_Chr19 FPKM 0.75703 0.0 0.0 0.0 0.0 0.0 0.0 0.94988 0.464634 0.0