Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00790 ATGGCTTTTTATGTCGGTCTTCTCTTCTTTCTCGTCTCTTCCGCCGCTGCTACTTGTGATCGTTGTGTTCATCAATCCAAAACTGCTTATTACTACGATGATACACCTATTCAACATGGGGCGTGTGGATATGGCCCTTTGGCATTTGAATTGTCCAATGGGTATGTCGCTGGCGTTGTGCCTTCCCTTTATAGACAAGGAGCTGGATGTGGCGCCTGTTTCCAGGTAAGGTGCAAGAACAAGAGATTTTGTAGCACTGCTGGAACTAAAGTGGTTGCTACCGATCAAAACTACGATAACCGATATGATTTTGTTCTTAGTAAGATAGCGTACTCCGCAATGGCTTTAAAGAATAAGACGAAAGAACTTTTGAATCTTGGAACAGTCGACGTGGAATATAAGAGGATACCTTGCACGTACAAAAACAAGAATTTGATGGTACGAGTAGAGGAATGGAGCCAAAAGCCATACTACTTGGCACTTAAGTTGGTATACCAAGGTGGGCAGACAGAAATAAAGGGCATAGAAATAGCTGAGGTTGGCTCTGATAATTGGGAATCCATGAAGAGAAACTATGGTGCCATTTGGGATACCAACAAGGTTCTTGAGGGAGCATTGCAGTTGAAAATAGTTGTAGCTTCAAGGTACAACAATGAGAACATATATTGGGCAACCTACGACCTTCCCGATGATTGGAAGAATGGAGAGATGTACGATACTGGAGTTCAAATCGATGATATTGTCAACGAAAAATGTCCACCAAAGCAATGTGGTGATTTGCCATGGAAGTAA 792 42.42 MAFYVGLLFFLVSSAAATCDRCVHQSKTAYYYDDTPIQHGACGYGPLAFELSNGYVAGVVPSLYRQGAGCGACFQVRCKNKRFCSTAGTKVVATDQNYDNRYDFVLSKIAYSAMALKNKTKELLNLGTVDVEYKRIPCTYKNKNLMVRVEEWSQKPYYLALKLVYQGGQTEIKGIEIAEVGSDNWESMKRNYGAIWDTNKVLEGALQLKIVVASRYNNENIYWATYDLPDDWKNGEMYDTGVQIDDIVNEKCPPKQCGDLPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7916194 7917769 + CmoCh19G007900.1 Cmo19g00790 403950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00790 263 Gene3D - 12 139 IPR036908 -
Cmo19g00790 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 240 IPR007117 -
Cmo19g00790 263 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Cmo19g00790 263 PANTHER EXPANSIN-LIKE A1-RELATED 7 259 - -
Cmo19g00790 263 Gene3D - 140 244 IPR036749 -
Cmo19g00790 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Cmo19g00790 263 Pfam Expansin C-terminal domain 146 214 IPR007117 -
Cmo19g00790 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cmo19g00790 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cmo19g00790 263 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Cmo19g00790 263 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Cmo19g00790 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cmo19g00790 263 PANTHER EXPANSIN-B3 7 259 - -
Cmo19g00790 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cmo19g00790 263 Pfam Lytic transglycolase 59 133 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00790 Cmo-Chr19:7916194 Cmo19g00792 Cmo-Chr19:7923563 5.39E-123 dispersed
Cmo19g00790 Cmo-Chr19:7916194 Cmo19g00791 Cmo-Chr19:7919513 1.53E-100 tandem
Cmo11g01767 Cmo-Chr11:12448437 Cmo19g00790 Cmo-Chr19:7916194 1.74E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00790 - - csv:101209988 446.432