Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00792 ATGGCTTGGTTCCTTAGCTTCTTCTTCTTCTTCCTCGTCTCGTCTGCTACTGCTTGTGATCGTTGTATTCATCGATCCAAGGCTACTCATTACTATGGAGATTCACCAACTTCATATGGAGGAGCATGTGGTTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTCTCAGCTGCTGTCCCTTCTCTTTACAAACAAGGAGCTGGCTGTGGTGCATGTTTTCAGGTGAGATGTAAAGACAAAAGATTATGCAATGGAGCAGGGACGAAAGTGGTATTGACTGATCAAAATTATGATACGAGAGCCGATTTTGTTCTTAGTAGAAAAGCTTTTTCGGCCATGGCTTTAAAAGGAAAAGGTCAAGAACTTTTGAATACTGGAATTGTGGACGTAGAATATAAGAGGATACCTTGTGGATACAAAAACAAAAACTTGGCCGTTCGAGTTGAAGAATCGAGTTATAACCCGAACTATTTAGCCATTAAATTGTTGTACCAAGGTGGCCAAACTGAGATAGTGGCTGTTGAGATAGCTAAGGTTGGTTCATACGATTGGGTGAGCTTGAGTAGGAGCTATGGAGCTGTGTGGGATACCAATAAAGTACCGAGAGGAGCACTTCAAATGAGGATGGTAGTGACTTCAGGTTACGACGGAAAACGGGTATGGGCAAAATATGTGCTTCCTGTCGATTGGAAAACTGGAGTCATTTACGATACTGGAGTTCAAATCGACGATATTGCCAAAGAGGGTTGCCCTGCATCGGAGTGTGGTGATCGACCATGGAAATGA 792 42.93 MAWFLSFFFFFLVSSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNGAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQELLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAKVGSYDWVSLSRSYGAVWDTNKVPRGALQMRMVVTSGYDGKRVWAKYVLPVDWKTGVIYDTGVQIDDIAKEGCPASECGDRPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7923563 7925001 + CmoCh19G007920.1 Cmo19g00792 403952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00792 263 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576|GO:0019953
Cmo19g00792 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Cmo19g00792 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Cmo19g00792 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Cmo19g00792 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Cmo19g00792 263 Gene3D - 141 244 IPR036749 -
Cmo19g00792 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 259 - -
Cmo19g00792 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cmo19g00792 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cmo19g00792 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cmo19g00792 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cmo19g00792 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cmo19g00792 263 PANTHER EXPANSIN-B3 5 259 - -
Cmo19g00792 263 Pfam Lytic transglycolase 60 134 IPR009009 -
Cmo19g00792 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cmo19g00792 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cmo19g00792 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cmo19g00792 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cmo19g00792 263 Gene3D - 12 139 IPR036908 -
Cmo19g00792 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00447 Cmo-Chr19:5463311 Cmo19g00792 Cmo-Chr19:7923563 2.58E-57 dispersed
Cmo19g00790 Cmo-Chr19:7916194 Cmo19g00792 Cmo-Chr19:7923563 5.39E-123 dispersed
Cmo19g00792 Cmo-Chr19:7923563 Cmo19g00794 Cmo-Chr19:7930122 9.93E-80 dispersed
Cmo19g00791 Cmo-Chr19:7919513 Cmo19g00792 Cmo-Chr19:7923563 6.18E-110 tandem
Cmo19g00792 Cmo-Chr19:7923563 Cmo19g00793 Cmo-Chr19:7925672 5.72E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00792 - - csv:101206821 498.049