Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00793 ATGGCTTGGTTTCTTGGCTCTCTCTTTCTAGTTTTCATATCTTCTGCTACCGCTTGTGATCGTTGTGTTTTTCAATCTAAAGCTAGTCATCTTTATGAATCACCCACTACATATGGGGGAGCATGTGGTTATGGAAACTTGGCGTTGCAGTTCTCCAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTCTATAAACAAGGAGCTGGTTGTGGTGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAACACGGTAGGAACCAAGGTGGTACTGACAGATCAAAATAATGACAATGCAACGGACCTTGTTCTTAGTCAAAGAGCTTTCTTTACCATGGCTCTCAATGGTAAAGGCGCGGATCTTTTGAATCTTGGCGTGGTTGATGTTGAATATAAGAGGGTTCCATGTGAATATCCAGGTAGAAATTTGTTGGTGCGAGTGGAAGAATCAAGCTACAATCCATTCAAGCTGGCTATTAAGTTCTTCTACCAAGGTGGCCAAACAGACATGATTGCTGTGGACGTAGCTCAAGTTGGAACCTCTGATTGGAGCCATATGAAGAGAAGCTATGGCGCTGTTTGGGAGACAGACAACGTTCCCGAGGGCGCACTGCAGTTGAGAATGGTGGTTACTTCAGGATATGATGGGAAATGGGTTTGGGCGAAGTCTGTGCTTCCTGCTAATTGGGGTGTCGGGGCCATCTTCAACACTGGTGTTCAAATCAACGACATTGCCAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATGGCCAATGGAAATAA 789 45.25 MAWFLGSLFLVFISSATACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNATDLVLSQRAFFTMALNGKGADLLNLGVVDVEYKRVPCEYPGRNLLVRVEESSYNPFKLAIKFFYQGGQTDMIAVDVAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIFNTGVQINDIAKESCPPWQCGDGQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7925672 7928337 - CmoCh19G007930.1 Cmo19g00793 403953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00793 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Cmo19g00793 262 Gene3D - 140 244 IPR036749 -
Cmo19g00793 262 PANTHER EXPANSIN-B3 7 257 - -
Cmo19g00793 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cmo19g00793 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cmo19g00793 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cmo19g00793 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cmo19g00793 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Cmo19g00793 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Cmo19g00793 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Cmo19g00793 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cmo19g00793 262 PANTHER EXPANSIN-LIKE A1-RELATED 7 257 - -
Cmo19g00793 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cmo19g00793 262 Gene3D - 13 139 IPR036908 -
Cmo19g00793 262 SUPERFAMILY Barwin-like endoglucanases 10 142 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01767 Cmo-Chr11:12448437 Cmo19g00793 Cmo-Chr19:7925672 1.27E-90 dispersed
Cmo19g00791 Cmo-Chr19:7919513 Cmo19g00793 Cmo-Chr19:7925672 8.57E-110 dispersed
Cmo19g00793 Cmo-Chr19:7925672 Cmo19g00795 Cmo-Chr19:7939489 5.53E-117 dispersed
Cmo19g00792 Cmo-Chr19:7923563 Cmo19g00793 Cmo-Chr19:7925672 5.72E-139 tandem
Cmo19g00793 Cmo-Chr19:7925672 Cmo19g00794 Cmo-Chr19:7930122 9.47E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00793 - - csv:101209628 511.146