Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00794 ATGGGTTGGTTTTTCACTGTTCTTCTTCTCTTTATTGCATCTTTTGCTAATGCTTGTGATCGCTGTATTTTTCAATCCAAGGCTGCTCATTACTACGAGGATGCGCCCACTTCATATGGAGGCGCTTGTGGGTATGGAAATTTGGGGTTGGAGATGTCCCAAGGCTACTTTGCAGCTGCTGTGCCTTCTCTTTTTCGAGAAGGGATGGGTTGTGGTGCATGTTATCAGGTAAGATGCAAGAATGCAACACTATGCAACACAATGGGGACTAAAGTAACTTTAACAGATAAGAATTCAGATAATAGAACAGATTTTGTTCTTAGTAAAAAAGCTTTTTCTGCTATGGCTTTAAAAGGCAAAGCCCAACAACTTTTGAAAACTGGAATTGTTGATATGGAATACAAGAGGAACTATGGACCAATTTGGGAGACCAATAATGTGCCTGGAGGGGCCATTAAGCTAGTGGTGATCGTAGTTTCGGGGTATAACAATGGGAGGGGGATTGTGATAGATTATGCACTGCCTGCTGGTTGGAAAAATGGAGAAATTTACGATACTGGAATTCAAATCAAGGATATTGCTTCTGAATATTGCAATCCTTGGCGGTGTGATGGGGGAGCATGTGGTTATGGCAACGTGGCCTTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCCCTTTACAGACAAGGAGCTGGCTGTGGCGCTTGCTATCAGGTGAGATGCAAAAATAGAAGGCTTTGTAACACATTAGGGACTAAAGTGGTGTTGACAGATCAAAACAATGACAATGCAACAGACCTTGTTCTTAGTAAAAGAGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCTGACCTCCTCAATCTTGGCGTTGTTGATGTTGAATACAAGAGGGTGGCATGTGAATACAAACACAAGAACTTGTTAGTCCAAGTGGAAGAACCAAGTTCTAACCCATATTACCTAGCTATCAAATTCTTATACCAAGGTGGGCAAACAGACATGGTAGCCGTGGACATAGCTGAAGTGGGTACCTCAGGTTGGAGCCATATGAAGAGAAATTATGGAGCTGTTTGGGAAACAAACAACATCCCTGAAGGAGCATTACAATTGAGGATGGTGGTGACTTCAGGCTACGATGGAAAATGGGTTTGGGCAAAATCAGTGCTTCCTGCTGATTGGAAAAGTGGAGGTATTTACGATACTGGAGTTCAAATCAACGACGTTGCTAAAGAGAGTTGCCCGCCTTGGCAATGTGGTGATAAGCCATGGAAATGA 1287 43.05 MGWFFTVLLLFIASFANACDRCIFQSKAAHYYEDAPTSYGGACGYGNLGLEMSQGYFAAAVPSLFREGMGCGACYQVRCKNATLCNTMGTKVTLTDKNSDNRTDFVLSKKAFSAMALKGKAQQLLKTGIVDMEYKRNYGPIWETNNVPGGAIKLVVIVVSGYNNGRGIVIDYALPAGWKNGEIYDTGIQIKDIASEYCNPWRCDGGACGYGNVALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTLGTKVVLTDQNNDNATDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVACEYKHKNLLVQVEEPSSNPYYLAIKFLYQGGQTDMVAVDIAEVGTSGWSHMKRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGGIYDTGVQINDVAKESCPPWQCGDKPWK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7930122 7936678 + CmoCh19G007940.1 Cmo19g00794 403954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00794 428 PRINTS Expansin/Lol pI family signature 226 244 IPR007118 GO:0005576
Cmo19g00794 428 PRINTS Expansin/Lol pI family signature 204 222 IPR007118 GO:0005576
Cmo19g00794 428 PRINTS Expansin/Lol pI family signature 292 308 IPR007118 GO:0005576
Cmo19g00794 428 PRINTS Expansin/Lol pI family signature 351 365 IPR007118 GO:0005576
Cmo19g00794 428 PRINTS Expansin/Lol pI family signature 391 405 IPR007118 GO:0005576
Cmo19g00794 428 SUPERFAMILY Barwin-like endoglucanases 8 136 IPR036908 -
Cmo19g00794 428 SUPERFAMILY Barwin-like endoglucanases 198 308 IPR036908 -
Cmo19g00794 428 SUPERFAMILY PHL pollen allergen 310 404 IPR036749 -
Cmo19g00794 428 PANTHER EXPANSIN-LIKE A1-RELATED 204 423 - -
Cmo19g00794 428 SUPERFAMILY PHL pollen allergen 132 186 IPR036749 -
Cmo19g00794 428 Pfam Expansin C-terminal domain 315 394 IPR007117 -
Cmo19g00794 428 PANTHER EXPANSIN-B3 5 136 - -
Cmo19g00794 428 Gene3D - 306 410 IPR036749 -
Cmo19g00794 428 SMART dpbb_1 58 134 IPR007112 -
Cmo19g00794 428 SMART dpbb_1 223 299 IPR007112 -
Cmo19g00794 428 Pfam Lytic transglycolase 59 134 IPR009009 -
Cmo19g00794 428 Pfam Lytic transglycolase 224 299 IPR009009 -
Cmo19g00794 428 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 323 405 IPR007117 -
Cmo19g00794 428 Gene3D - 177 305 IPR036908 -
Cmo19g00794 428 Gene3D - 13 137 IPR036908 -
Cmo19g00794 428 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 205 309 IPR007112 -
Cmo19g00794 428 PANTHER EXPANSIN-B3 204 423 - -
Cmo19g00794 428 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 112 186 IPR007117 -
Cmo19g00794 428 PANTHER EXPANSIN-B3 135 200 - -
Cmo19g00794 428 PANTHER EXPANSIN-LIKE A1-RELATED 5 136 - -
Cmo19g00794 428 PANTHER EXPANSIN-LIKE A1-RELATED 135 200 - -
Cmo19g00794 428 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 136 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00792 Cmo-Chr19:7923563 Cmo19g00794 Cmo-Chr19:7930122 9.93E-80 dispersed
Cmo19g00793 Cmo-Chr19:7925672 Cmo19g00794 Cmo-Chr19:7930122 9.47E-77 tandem
Cmo19g00794 Cmo-Chr19:7930122 Cmo19g00795 Cmo-Chr19:7939489 3.76E-49 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00794 - - csv:101209873 451.055