Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00795 ATGCCTTTCTTCTTCCCCATTCTCTTCCTCTCCCTCCTCTCCGCCGCCACCGCCTGTGATCGCTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAGGACGAGGCCGCCGGAGCATACAGAGGCGCCTGTGGCTATGGCGATCTGACACCGGCGCTCGCAAATGGCTACTTCTCCGCCATCATGCCTCCCCTTTACAAGTACGGCGCTGGCTGTGGCGCCTGTTTTCAAGTACGTTGCAAGAATGAAAAAATTTGCACCAAAGAAGGGACCAAAATTGTCGTGACGGATCGAAATGACAACACATACACCGGATTGGTTCTTAGCCAAAAGGCTTTTGGTGAAATGGCTGTGAGTGGGAAAGATGGATTGCTTCTGAGTTATGGAGTTGTGGACGTGGAATTCAAAAGGATTCCTTGTGAATACAAGAATCAAAACTTGTTGATTAGAGTGGAAGAATGGAGTCAATATCCAAGTTACTTAGCTATTAAATTGCTTTACCAAGGTGGTCAAACGGAAATTGTCGGGATGGATATAGCTCAGGTTGGTTATTCGAATTGGGATTATATGGGTAGGAACTATGGAGCTGTGTGGGAGACTAAGAAACCGTTACCGAAAGGGCCATTGCAGTTGCGATTCGTGGTGACTTCTGGATACGATGGAAAGTGGATTTGGGCTAAGTATGTGCTTCCTGCTGATTGGAGACCTGGACTCATTTACGATACTGGAGTTCAAATCTATGATATTGCTAAGGAAGGTTGTCCGACAGAGCAATGTGGTGATGGACAGTGGCGACGACGATAA 801 47.57 MPFFFPILFLSLLSAATACDRCVHQAKAAFYQDEAAGAYRGACGYGDLTPALANGYFSAIMPPLYKYGAGCGACFQVRCKNEKICTKEGTKIVVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYKNQNLLIRVEEWSQYPSYLAIKLLYQGGQTEIVGMDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQIYDIAKEGCPTEQCGDGQWRRR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7939489 7941087 + CmoCh19G007950.1 Cmo19g00795 403955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00795 266 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cmo19g00795 266 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cmo19g00795 266 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cmo19g00795 266 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cmo19g00795 266 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cmo19g00795 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cmo19g00795 266 Gene3D - 141 246 IPR036749 -
Cmo19g00795 266 PANTHER EXPANSIN-B3 5 260 - -
Cmo19g00795 266 Gene3D - 11 140 IPR036908 -
Cmo19g00795 266 Pfam Lytic transglycolase 60 133 IPR009009 -
Cmo19g00795 266 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Cmo19g00795 266 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cmo19g00795 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cmo19g00795 266 Pfam Expansin C-terminal domain 149 230 IPR007117 -
Cmo19g00795 266 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01614 Cmo-Chr2:9295484 Cmo19g00795 Cmo-Chr19:7939489 4.37E-53 dispersed
Cmo11g01768 Cmo-Chr11:12451304 Cmo19g00795 Cmo-Chr19:7939489 1.58E-135 dispersed
Cmo11g01769 Cmo-Chr11:12454951 Cmo19g00795 Cmo-Chr19:7939489 5.83E-149 dispersed
Cmo19g00793 Cmo-Chr19:7925672 Cmo19g00795 Cmo-Chr19:7939489 5.53E-117 dispersed
Cmo19g00794 Cmo-Chr19:7930122 Cmo19g00795 Cmo-Chr19:7939489 3.76E-49 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00795 - - csv:101217243 513.457