Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00799 ATGGATTCCTTTGCTGCAAACCAAAAGAAATCATTCCACATCCGTTCAAACAGTTTGCCCTCAAAGCCACATCCAGTTGTGGATGAGGTTGATGAACATCTCTGCAGATTAAAGGCCTCTGAAGCCACTTCTTCCTCTTCTTTGTGTCAAAAACTTGATGGTCTTCAAGATTTGCATGATTGCATTGATAAGTTGCTTATTTTGCCACTCACCCATCAAGCTATTGTTGACAACAAATCAGTTGATGAGTTGCTAGAAGGATCTCTCAAGCTCTTGGACTTGTGTGCTATGGCTAAGGATGCATTGATGCAAACAAAAGAAAGCACACATGAACTCGAGTCGACTTTGCGTAGAAGACGAGGAGACGACATCGTTGGTGATGTTCAGAAGTATTTGAACTCAAGGAAGATGATAAAGAAGGCAATCCACAAGGCCTTGAAGGGAATTGAAAGGCTAAGTTTCCAAAAAAGTGATAAAAGTTTAGAAATTGTTAGCTTGTTAAAAGAGGCAGAAGCTGTCACATGTAACAGCCTTGAGTCCTTGCTATCATTTGTAGCAGGACCAAAGGTGCCATCAAAGATGAGCAGATGGTCTCTGGTTTCCAAGTTGATTCAAGCCAAGAAAGTGGCTACCAAAGATGAAGACTCAAATGGGAATGAAGTACAAATGGTGGATGCTGCATTGTATTCAATCACCAGGAAATCTGATTTCCTTGTTCAAGTTGAAGATTTGCAAAACATGCTGAGAAACTTCGAGTCGAGTATTCATGATCTTGAAGAAGATCTCGAGCGATTATTTAGGCGTCTTATCAAGAATAGAGTCTCCTTTCTTAACATCCTAAATCACTAA 849 40.28 MDSFAANQKKSFHIRSNSLPSKPHPVVDEVDEHLCRLKASEATSSSSLCQKLDGLQDLHDCIDKLLILPLTHQAIVDNKSVDELLEGSLKLLDLCAMAKDALMQTKESTHELESTLRRRRGDDIVGDVQKYLNSRKMIKKAIHKALKGIERLSFQKSDKSLEIVSLLKEAEAVTCNSLESLLSFVAGPKVPSKMSRWSLVSKLIQAKKVATKDEDSNGNEVQMVDAALYSITRKSDFLVQVEDLQNMLRNFESSIHDLEEDLERLFRRLIKNRVSFLNILNH 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7964186 7965034 - CmoCh19G007990.1 Cmo19g00799 403959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00799 282 Pfam Protein BPS1 51 279 IPR004320 GO:0048364|GO:0048367
Cmo19g00799 282 Coils Coil 241 268 - -
Cmo19g00799 282 PANTHER BPS1-LIKE PROTEIN 10 281 - -
Cmo19g00799 282 PANTHER DUF241 DOMAIN PROTEIN 10 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00799 - - - csv:101211103 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00277 Cmo-Chr2:1359874 Cmo19g00799 Cmo-Chr19:7964186 3.30E-69 dispersed
Cmo19g00799 Cmo-Chr19:7964186 Cmo19g00801 Cmo-Chr19:7971010 6.18E-173 dispersed
Cmo19g00808 Cmo-Chr19:8002481 Cmo19g00799 Cmo-Chr19:7964186 1.91E-110 dispersed
Cmo20g00723 Cmo-Chr20:3572429 Cmo19g00799 Cmo-Chr19:7964186 1.40E-74 dispersed
Cmo19g00798 Cmo-Chr19:7959125 Cmo19g00799 Cmo-Chr19:7964186 8.48E-71 tandem
Cmo19g00799 Cmo-Chr19:7964186 Cmo19g00800 Cmo-Chr19:7966943 8.92E-160 tandem
Cmo11g01771 Cmo-Chr11:12464147 Cmo19g00799 Cmo-Chr19:7964186 1.27E-137 wgd
Cmo19g00799 Cmo-Chr19:7964186 Cmo03g00661 Cmo-Chr3:5941821 8.01E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g244 . Blo15g00399 . . . . . Bma12g00903 Cmo19g00799 . . . . . Sed05g2188 . . Bhi05g01617 Tan02g0599 Cmetu01g2685 . . . . Cla02g00372 . . Cco02g0382 Clacu02g0371 Cmu02g0368 Cre02g0701 . . . Cone10ag1225 . Csa07g00160 . Cme01g01176 . . . . . . . . . . . Cma11g01348 . . . . . . . . . . . . . . . . . . . Lsi11g01261 . Chy01g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00799 Cmo_Chr19 FPKM 26.377792 29.401911 23.323448 24.903599 23.08898 24.644892 22.443596 25.836227 24.060822 24.72834