Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00813 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTCATGGTGACGGTGAAGAAGGGGGAGGTAGTGTTACAGTTAATATTCGATGTTCTAATGGTTCGAAATTTTCGGTGAGGACGAGTCTTGATTCCTTGGTTGGGACATTTAAATCAATTCTTGCTCAGAATTGTGACGTTCCAGCTGATCAGCAACGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAAACCTTAGTCAGTTATGGTTTACAGGCAGATCACACTATTCACATGGTTCGAGGTTTTGCCCAAGCTTCAGCACCACCTTCTGCACCTGCTTCCAATGTTAATAGTAGAAGTTCTGACACTGCTACTGGCGTTACAAGAGGTGTTGGTTCTACTGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGACTGGGTTTTAATCCTCTTGGTGGCGGTGGAGCTGGACTTCCTGAGTTCGAGCAAGTGCAACAACAGTTGACTCAAAACCCGAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGGACCTTAATTACGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCACATTCTCAATGACCCTGGTATCCTTCGACAGACGTTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACCGAGCTATGAGTAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACGATGGCTGGAAATGCTGGGAATGATTCAAGTGCAAACCCATTTGCAGCTCTCTTGTCCAACCAAGGGGGTGCACCAGCGAGGAACGAGTCTAATAATTCTTCAACTACAGGATCAGAAACAACAGGAAATGCTGCTCCAAATACAAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACAACAACCACACGGCCTACTCCAGCTGGTGATGCAAGGGCTCCTGGTATCGGAGGATTAGGAGGAGCTGGCCGTACAAATGTGGATCCTCTTGCTGGTGTTGTGCCAGACGCGGCTCAGATGAATCAGTTTCTGCAAAATCCAGCTATTTCACAGATGATGCAAAGCCTGCTCTCCAATCCTCAGTATATGAACCAGATCCTCAATCTGAACCCACAGCTACGGAGCATGGTCGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCGGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATTCAGCAAATGCTATCAATTCAGCAGTCACTCCTCTCTACCTTAAATCGACAGCCATCAGCTCAAGACTCTGCTCAATCAGGTGCTGCTGCTACAGGTGTTCCTAGCGCTGCTGGATTGGAGATGTTAATGAACCTGTTTGGTGGGCTCGGTGCTGGCGGGTTGGCTGTTTCGAACAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTTTCACAGCTCCAAGAGATGGGCTTCTTCGACACCCAAGAGAACATCAGAGCTCTACGCGCTACTTCCGGGAACGTTCATGCTGCTGTCGAACGACTGCTGGGAAATCTCGGGCAGTAA 1647 47.36 MGADGDSSEHRVHGDGEEGGGSVTVNIRCSNGSKFSVRTSLDSLVGTFKSILAQNCDVPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASAPPSAPASNVNSRSSDTATGVTRGVGSTESGAFGNAGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLITSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSANPFAALLSNQGGAPARNESNNSSTTGSETTGNAAPNTNPLPNPWGGTQTTTTRPTPAGDARAPGIGGLGGAGRTNVDPLAGVVPDAAQMNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMIQQMLSIQQSLLSTLNRQPSAQDSAQSGAAATGVPSAAGLEMLMNLFGGLGAGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8041502 8046143 - CmoCh19G008130.1 Cmo19g00813 403973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00813 548 Gene3D - 196 253 - -
Cmo19g00813 548 SUPERFAMILY UBA-like 502 544 IPR009060 GO:0005515
Cmo19g00813 548 SMART CBM 406 441 IPR006636 -
Cmo19g00813 548 SMART CBM 200 239 IPR006636 -
Cmo19g00813 548 SMART CBM 370 402 IPR006636 -
Cmo19g00813 548 SMART CBM 148 187 IPR006636 -
Cmo19g00813 548 Gene3D - 9 107 - -
Cmo19g00813 548 MobiDBLite consensus disorder prediction 288 343 - -
Cmo19g00813 548 CDD UBA_PLICs 506 544 - -
Cmo19g00813 548 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 548 - -
Cmo19g00813 548 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 501 545 IPR015940 -
Cmo19g00813 548 MobiDBLite consensus disorder prediction 101 123 - -
Cmo19g00813 548 Pfam UBA/TS-N domain 506 542 IPR015940 -
Cmo19g00813 548 MobiDBLite consensus disorder prediction 98 123 - -
Cmo19g00813 548 SUPERFAMILY Ubiquitin-like 13 111 IPR029071 -
Cmo19g00813 548 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00813 548 CDD Ubl_Dsk2p_like 23 95 - -
Cmo19g00813 548 PANTHER UBIQUILIN 1 548 - -
Cmo19g00813 548 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Cmo19g00813 548 Gene3D - 488 547 - -
Cmo19g00813 548 SMART ubq_7 23 94 IPR000626 GO:0005515
Cmo19g00813 548 SMART uba_6 506 544 IPR015940 -
Cmo19g00813 548 MobiDBLite consensus disorder prediction 1 17 - -
Cmo19g00813 548 MobiDBLite consensus disorder prediction 288 346 - -
Cmo19g00813 548 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00813 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 889.412
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01783 Cmo19g00813 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01182 Cmo-Chr12:10685584 Cmo19g00813 Cmo-Chr19:8041502 4.66E-09 dispersed
Cmo16g01321 Cmo-Chr16:9374449 Cmo19g00813 Cmo-Chr19:8041502 0 dispersed
Cmo19g00813 Cmo-Chr19:8041502 Cmo01g02060 Cmo-Chr1:14379291 2.02E-10 dispersed
Cmo11g01783 Cmo-Chr11:12538590 Cmo19g00813 Cmo-Chr19:8041502 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00813 Cmo_Chr19 FPKM 2.026455 0.0 0.0 0.0 2.072026 0.0 2.195671 0.0 0.0 0.0