Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00814 ATGAATTCAGATATGAACTCCCTCGCCATTTCCAGTAGTAGCAGCTCTGCCTTGGACCTCGCTATTCCATTTCAACTCGGAATCGTCGAATCTACTTTCGATTCCAAGGGCCGCCATAATCCACGCAAGAAGCGGTCAAGAACTGAAAATGCCTCCACTGCTGCCGTCGGTTCCAAGGCTAAGTATAGAAAGAAGCCGGATCCTACTGCGCCGAAGATCACTCCTCCGTGTAGTGAGTGTGGGAGGAGGTTTTGGTCGGATAAAGCGCTTTTTGGTCATATGAGGTGTCATCCTGAACGACAATGGCGGGGGATTAATCCGCCGGTTAGTTTCCGTCGCTCGGTTTCGGTTTCTCCTTTTAGACCTAGAGCTGATTTGGAAGAATCGGCGTTTACGGAAGAGGAACAGGACGTCGCTAATTGCTTGTTAGTGCTTGCCGATTGCCCTAGTGCGATCGCTAGGGTTTCCGATTTTCGATTCGAATGCGCGAGTTGTAAGAAAGTGTTTAGATCGCACCAGGCGCTTGGAGGACATAGGGCAAGTCACAAGAATGTGAGAGGCTGTTCCGCCATGGCGAAGAGCGATGAAGAAATAGAACATGATGCTCTGTTTGGACATTGTGGTCATGATTTGAGCATCAATCTGGAGGATAAAATGTCGATGATTTTAGGAACAGCAGCAGGGCATAAGTGTAGTGTATGTATGAGGGTTTTCGCGAGTGGTCAAGCACTTGGTGGCCATATGAGATGCCATTGGGAGAGAGTGGAGGAGAATGCAGCTACAGAAGAGGGGTTTCTTAACTTGGACTTGAACATGCCTGCCCCTGTTGAAGATGCCTCTTCTTCTTCGTATTCTTCAGGTCTCACTCTTGATCTTAGGTTGGGCCTCTGA 891 48.71 MNSDMNSLAISSSSSSALDLAIPFQLGIVESTFDSKGRHNPRKKRSRTENASTAAVGSKAKYRKKPDPTAPKITPPCSECGRRFWSDKALFGHMRCHPERQWRGINPPVSFRRSVSVSPFRPRADLEESAFTEEEQDVANCLLVLADCPSAIARVSDFRFECASCKKVFRSHQALGGHRASHKNVRGCSAMAKSDEEIEHDALFGHCGHDLSINLEDKMSMILGTAAGHKCSVCMRVFASGQALGGHMRCHWERVEENAATEEGFLNLDLNMPAPVEDASSSSYSSGLTLDLRLGL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8047935 8048825 + CmoCh19G008140.1 Cmo19g00814 403974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00814 296 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Cmo19g00814 296 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 21 296 - -
Cmo19g00814 296 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Cmo19g00814 296 Pfam C2H2-type zinc finger 77 99 - -
Cmo19g00814 296 Pfam C2H2-type zinc finger 159 183 - -
Cmo19g00814 296 Pfam C2H2-type zinc finger 229 253 - -
Cmo19g00814 296 Gene3D Classic Zinc Finger 157 251 - -
Cmo19g00814 296 MobiDBLite consensus disorder prediction 32 73 - -
Cmo19g00814 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 251 IPR013087 -
Cmo19g00814 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Cmo19g00814 296 SMART c2h2final6 75 97 IPR013087 -
Cmo19g00814 296 SMART c2h2final6 229 251 IPR013087 -
Cmo19g00814 296 SMART c2h2final6 160 182 IPR013087 -
Cmo19g00814 296 SUPERFAMILY beta-beta-alpha zinc fingers 228 253 IPR036236 -
Cmo19g00814 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Cmo19g00814 296 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 21 296 - -
Cmo19g00814 296 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Cmo19g00814 296 SUPERFAMILY beta-beta-alpha zinc fingers 76 182 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo19g00814 Cmo20g00713 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00814 Cmo-Chr19:8047935 Cmo02g01409 Cmo-Chr2:8357278 2.96E-22 dispersed
Cmo19g00814 Cmo-Chr19:8047935 Cmo20g00713 Cmo-Chr20:3507341 5.11E-34 wgd
Cmo19g00814 Cmo-Chr19:8047935 Cmo03g00654 Cmo-Chr3:5914106 2.23E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11649 PF13912 zf-C2H2_6 5.30E-11 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00814 - - cmos:111455526 572.778