Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00818 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAAGAGCAGGAGCAGGAGCAGAAGCAAAAGCATCACCACCAAACCAAGCGAATCAATACCTCCACCGCAATTTCCAACCCTAATTACGCTTCTCCAACTCCGCTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGCCCTCACTCCCGATGAGGTCGCTGATGACCACGAGGATGCCGAATACAACGACCAATTGGCTGCGAACCGCCGCGAGAGGAAACTCAAGCTCGTCGTCAGATTGCACTCCCCCAAATCTCCCGTCAATTCGTCGTCTCTCAATTCCTGTCGTTCCGATTCTAATGCGGACGTGGACGGTAATGCTGCGTCGATTAACAAAAAGCGGAAGATCGACACGATTGGGGAGGGATCTAGGATCCAACACTCCGAGAAGGTACTGCCATTTTGGGTGATAGCTGCGTTCTTTTTCGCAATCGATGAGAAGTCCATGTCTGCTACAAATCCCTCGAAAACCCTTCAAGGTTTTTGGTCGCATATGGATTCGGCACCCTCGACGCCTTTACCAGATAAGAAGCTTTTGGTTTTCATCCTCGACAGGCTTCAAAAGAAGGACATCTATGGTGTGTTTTCTGAACCAGTGGACCCCAACGAGCTTCCAGACTACCACGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGGGAGAAGCTTACTTCTGGAGCTTATAGCAGCTTGGAACAGTTTGAAAAAGACGTTCTCTTAATCAGTTCGAACGCAATGCAATATAATTCCTCAGATACTATATATTATCGGCAGGCGCGTACCATACAAGAGTTGGCAAAAAAGAGTTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCACCGACTAAGAATTTTAAAAAACCATTGGGTAGACCTCCCATGGAACGTGCTGGTTCGGAGTTTTCCCCAGATGCCACTCTTATTACTGGTGGTGAAAACACAAATCGGTCCAGCGATTTGAGGAAAGGACTTCATCATTTTGAAAAGCCTGGTTTAGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCCAATAGTGAAGCTGCATTTAATTTGTTTAACCCGAACAGATTTGATAGAAGCGAGGACATGACAGGTTCTGCACTGAGATTCAATTCAGTAAGACAGGGGAAAAAACCGATCGTCTCCGATGAGAATCGGCGTGACACATATAAGCAATTTCAAGCGGCAACTACTTTACTGGAGCCCTCTGTGCTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGGCTTTTCTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTTGCTGCAGATCTTGGATCTGTAGCATGGAGAGTTGCGTCTAAGAAAATTGAGAGAATTTTACCCACAGGTTCGAGTTTTGGTCCTGGATGGGTTGTAGAAGATGATACCACACCAAAGAGGGTGTTTCTACCGCAAGCTGAACTCGGTCAAAAGTCGACGTTGCATGAAAGTTTGGCTCCTGATGTAAAGCCTCTTGCTCCTGAACAAAAGACGGTTCGATCATCCGACAACTCTGAAGCTGATACGTCGTCTAAGATGCATGATGAGCCTTCTCATGTCCCCAGTTCAGATGGCTATTTACCCTCCAGGCCTCCCGCTGAGTTCTCTGCAGCTTCTTCATCATCGCCATTGAGTACTCGACAATCTTCAGAGCCCTGCAGGGGACAGACGGAAACAGTTGAAGGATTAAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCGAGGCCTTCGTTACAGAAACACGAGAATCTAACAATCCGCCATGGTATGAATGGATTCAATGGTGCTTATGGCTTTGATCTCTCTGCTCACAGGGGGAAACTAATAGGCGCATCCGCGTCCGAGCCTGCTGGTGTAAAGCCTCAGTCATCATCTCAAATGCTCGAGATGATCTCGAGGACTAATGCTAATTTCATCCTTCCAGCAATGGCAACCCGACTGAATCTGAAAGAACCAAAATGTCCCGAAAACAATCTTGGTACAACAAACTCTTCCAGTTCATTGCTCGGGTCGGGGAACGAGACTCTTATGGAAACACCATGGCGGCAGCGGCAGCAGCCGCAGCCGCAGCAGCCGCAGGGGCCATCATCAGCACCAGCACCAGAAGAAACAGCAGTAACAACAACAACAACACTATACAAACCCGAATCCGTTCCCCCGGACCTGAACGTGAGATTTAAATCTCCAGGATCTCCTCCTCCTAGCTCTAAAGTAAATAAATTTCGCTTAATGGTTATATACTCGTCAAAATATTTGAATGATCTTGATAGATTGAAACCAAGCAACCATAATGCACGTCAGTTGACTATAAACAAACCGACAGATTTTCAGTCTGTTATCATCTTCCTTCTTCAGTTTCCACCAGATTTTCAGTTCTGCGACTCGTTCAATCTTCGTGGTAAAACCGTTCAATCTTCAATTAATTCCAATTTTTTCCACTCCCCTGTGTTTCCACCGCAATGGCCATTCATCGCTGCTGATATTTCCATCTCAAAACATGTACAGGAAGAGATAGAGCGAGATAAATGGGGATTTGCTGGGGTTCTCCAGATGATAATCATACCCCTAATACCACCGGACATCTCAGTTCAGTTCTATTTCAAAATCCGGTTGGAAAAGTGTTATCGAATTTATACTGTCGGCTATTTCATATATGATTACAGATTGAACAAAAACAAAATACTTTTTCTTGGTAGGTGTGATCCACTAGACATAAATCAATTTTTTCATAACCTTTAA 2907 45.34 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEEQEQEQKQKHHHQTKRINTSTAISNPNYASPTPLRRSTRRNPNPDALTPDEVADDHEDAEYNDQLAANRRERKLKLVVRLHSPKSPVNSSSLNSCRSDSNADVDGNAASINKKRKIDTIGEGSRIQHSEKVLPFWVIAAFFFAIDEKSMSATNPSKTLQGFWSHMDSAPSTPLPDKKLLVFILDRLQKKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVREKLTSGAYSSLEQFEKDVLLISSNAMQYNSSDTIYYRQARTIQELAKKSFKNLRQDSDDNEPEPKVVRRGRPPTKNFKKPLGRPPMERAGSEFSPDATLITGGENTNRSSDLRKGLHHFEKPGLADFSGRFSFSSNSEAAFNLFNPNRFDRSEDMTGSALRFNSVRQGKKPIVSDENRRDTYKQFQAATTLLEPSVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWRVASKKIERILPTGSSFGPGWVVEDDTTPKRVFLPQAELGQKSTLHESLAPDVKPLAPEQKTVRSSDNSEADTSSKMHDEPSHVPSSDGYLPSRPPAEFSAASSSSPLSTRQSSEPCRGQTETVEGLNPSSDYNVLESSIPISRPSLQKHENLTIRHGMNGFNGAYGFDLSAHRGKLIGASASEPAGVKPQSSSQMLEMISRTNANFILPAMATRLNLKEPKCPENNLGTTNSSSSLLGSGNETLMETPWRQRQQPQPQQPQGPSSAPAPEETAVTTTTTLYKPESVPPDLNVRFKSPGSPPPSSKVNKFRLMVIYSSKYLNDLDRLKPSNHNARQLTINKPTDFQSVIIFLLQFPPDFQFCDSFNLRGKTVQSSINSNFFHSPVFPPQWPFIAADISISKHVQEEIERDKWGFAGVLQMIIIPLIPPDISVQFYFKIRLEKCYRIYTVGYFIYDYRLNKNKILFLGRCDPLDINQFFHNL 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8058986 8070005 - CmoCh19G008180.1 Cmo19g00818 403978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00818 968 ProSiteProfiles Bromodomain profile. 219 289 IPR001487 GO:0005515
Cmo19g00818 968 SUPERFAMILY Bromodomain 202 312 IPR036427 GO:0005515
Cmo19g00818 968 MobiDBLite consensus disorder prediction 585 617 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 708 791 - -
Cmo19g00818 968 Pfam Bromodomain 214 293 IPR001487 GO:0005515
Cmo19g00818 968 MobiDBLite consensus disorder prediction 115 138 - -
Cmo19g00818 968 ProSitePatterns Bromodomain signature. 225 281 IPR018359 -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 1 16 - -
Cmo19g00818 968 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 795 - -
Cmo19g00818 968 Coils Coil 17 45 - -
Cmo19g00818 968 SMART bromo_6 200 308 IPR001487 GO:0005515
Cmo19g00818 968 MobiDBLite consensus disorder prediction 305 323 - -
Cmo19g00818 968 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 795 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 49 76 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 1 88 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 305 364 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 17 42 - -
Cmo19g00818 968 CDD Bromodomain 207 301 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 111 138 - -
Cmo19g00818 968 PRINTS Bromodomain signature 222 235 IPR001487 GO:0005515
Cmo19g00818 968 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Cmo19g00818 968 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Cmo19g00818 968 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Cmo19g00818 968 Gene3D - 205 321 IPR036427 GO:0005515
Cmo19g00818 968 MobiDBLite consensus disorder prediction 711 772 - -
Cmo19g00818 968 MobiDBLite consensus disorder prediction 530 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00818 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1066.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01786 Cmo19g00818 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00238 Cmo-Chr8:1431683 Cmo19g00818 Cmo-Chr19:8058986 1.02E-08 dispersed
Cmo19g00818 Cmo-Chr19:8058986 Cmo11g01635 Cmo-Chr11:11627479 1.23E-12 dispersed
Cmo01g02077 Cmo-Chr1:14463536 Cmo19g00818 Cmo-Chr19:8058986 4.89E-82 wgd
Cmo11g01786 Cmo-Chr11:12559458 Cmo19g00818 Cmo-Chr19:8058986 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00818 Cmo_Chr19 FPKM 2.553275 2.588528 1.938722 1.190929 1.928175 1.606032 1.36672 2.195946 2.462192 1.822296