Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00819 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCCTACTTTCGACGTGCCGATTTGGATCGCGATGGTCGAATTAGTGGCGCTGAAGCGGTTTCCTTCTTTCAAGGCTCTGGATTGCCCAAACCGGTTCTTTTTCAGATTTGGGCGCTTTCAGACCCTAGACAGATTGGCTTCCTTGGTCGGGCGGAGTTTTATAATGCCCTTAGGCTGGTCACCGTAGCGCAGAGTAAGAGGGAATTAACTCCTGATATTGTGAAAGCAGCGTTGTTTAGCCCAGCTGCATCCAAAATACCAGCACCACAAATAAATTTCAATACCCAGCCTGCACCTCAGTTCAATTCTACTGCACCGGTATCTACACCTCTGAGTGGCATTGGTACTCCTACGCCCTCCCGAAGTTCTGGGTTGGAATTACAGGTTCCACGAAACGTCACTACGAACGTTCCGCTAGTTTCTTCTAGAGAGAGTCAGTTAGTTAGGCCTCCATTGGCAACTTCAAATTCTGCTTTCCGTCCAGCACAGGGATTTTCAGGAGTCGGCACTGTCTCGGGGCCACCTCCAACAAATTCAATCATCTCAAATGATTGGGTTAGTGAACGTGCCAGTGGAATTCAGGGGACACCCTCGCAACCTCCAAACAGAGGAGTCAGTCCTGCTGGAATGCAGGTCGGATTTGGCCAATCAAGTGCTGGACTAACAACTTCTCAACCCCAAAGGCCTCAGTCTGCTCCTGGAGTAATGCCGGCTGCATCATCACCTGTGGAGAGTAAAGTGCAAGGTATTTCTGGAAATGGGACTGCTTCTGGATCTTATTTTGGAAGAGATGCCTTTCCTGCAACCCCAGTTTCTTCAAAACAAGATGTCCCTGCTGGCAATAAGACTTCCACATCAGTCACTGTTCCTGTGTCTTCTGTTACACAACCAATAGTTAGAGCAACTTCCCTTGATTCTTTGCAGAATTCTTTTATGAAACCGCCTCTCGCTAATCAAGCCCTACGGAACCAGCCACATGTGAAGCCCAATCAACAGAGCATATTGCAACCTGCTTCCTCTGGATTATCAACAGGATTGCAGAACTCTGTTTATGGACAGTCTCAGCGCCCTTGGCCTAGAATGACACAGAATGATGTGCAGAAGTATACCAAAGTTTTTGTTGAGGTGGACAAAGATAGAGATGGAAAAATTACCGCTCAAGAAGCACGCAACTTGTTCTTGAGTTGGAGGCTGCCAAGAGAGGTTTTAATGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTTTATTTGTTGGAGCGGCATAGGGAAGGACATGTTCTTCCTGCTATGCTTCCTAGCAACATCATGTTTGATTTTCCCAGCAATGGTCATCCTGTGACTCCAGCTGCATCTAACCATAGCAATGCAGCTTGGAGAACGACAGCTGGTCATCAACAGCACCAAGGGGTTCCTGGGTCTGGTAATCTTCATGGAGCTCCTACAATTGGAGTACGTCCACCTATACCTGCTGCTGCCCTCCCGGTTGAGGATGAGCCACAGACCAATCAACCTAAATCAAAGGTTCCTCTGCTGGATAAAAATCTTGTTAGTCAACTTAGTACAGAAGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGAAGATGCTGAGAAAAAGGTTGAAGAACTGGAGAAAGAAATTTTGGACTCTAGACAGAAAATCGAGTATTATCGTACTAAAATGCAGGAACTTATTTTGTACAAGAGCAGATGTGACAATCGGTTGAATGAAATATCTGAAAGAGTGTCTTCAGAGAAACGTGAGGTAGAGTCCCTTGCCAAGAAATATGAAGAGAAATATAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAAAAGAAGATGGAACTGTATCACACGATTGTAAAGATGGAACAAGATATTAGTGAAGATGGTGTTCTTCAGGCTCGTGCTGATCGTATTCAGTCAGATATTGAAGAGTTGGTGAAAGTTCTCAATGAACGCTGCAAGAGTTATGGTTTGCGTGCAAAACCAATAACTCTAACGGAACTTCCTTTTGGCTGGCAACCTGGAATCCAAGTGGGTGCTGCTGACTGGGATGAAGATTGGGACAAATTCGAAGAGGAAGGTTTCTCTGTTGTCAAGGAGCTCACTCTTGATGTACAAAATGTCATTGCCCCTCCTAAGCAGAAATCTAAGTCAGTACAAAAAGAAAAAGGTTCAACCGTTGACAGCCAAAACGTTACACCTGCAGCGGATGCTGATGCCAAGGAAGGAGGTTCTGCACCAGATGCTGATACGAAGGGAGAGAAACCGCCCTCTATTGATGAAACAGCTGTTGAAAATGGTTCCGCACATGATAATAAAAGTGAAAATGGGTCAGCCAAAAGTGCTCCTAACAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCAACCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCTCCTAGCAGCCCCTTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATATGGATTCCAGTTTTGGAAAGGCTGCTGGCTTTGATGCTTCACCCCGTGCTAAGGACGCTTTAAGTGATCATGGAGGTGCAGGATCTGTGTTTTCTGGTGACAAGAGCTACGACGAACCAGCTTGGGGAGCATTTGATGCGAACGATGATATTGACTCTGTTTGGGGCTTTAACGCAGGAGGTTCCACCAAGGCCGACAATGATGTAACCCGGGACAACTACTATTTCGATTCTGGGGATTTCGGCTTGAATCCTATTAGAACAGATCCATTCCAGGCTAAGAGAAGCACATTTGCTTTTGATGAGTCTGTTCCTAGCACCCCACTCGTCAACTCAGGAAATTCACCAAATAATTACCATGATGGATCTGAACCAAGCTTCGACAGCTTCTCAAGGTTCGATTCTTCCAGTGTGCATGACAGTGGTTTTTTCCCTCCTAAGGACACATTTACACGGTTCGATTCGATGCGTAGCAGTAGAGATTTCGACCAGGGTCCTGGATTCTCCTCATTCAGTCAATTCGATACAACGTACAACAACAGAGACTTTGATCAGGGTGGATCCTCATCACTGACACGATTCGATTCAATGCGCAGCAGTAAGGACTTCGATCAGGGATCCCCTTCATTGTCACGATTTGATTCAATGCGTAGCAGCAAGGACTTCGACCAGGGATTCCCTTCATTGGCAAGATTCGACTCAATGCGCAGCAGCAAAGACTTCGATCAAGGTCACGGATTCCCATCGTTCGATGATCCAGACCCGTTTGGATCAACAGGGCCGTTTAGAGCGTCCCTGGATAATCAAACTCCAAAGAAAGGATCAGATAATTGGAGTGCCTTTTAG 3453 46.42 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVSFFQGSGLPKPVLFQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALFSPAASKIPAPQINFNTQPAPQFNSTAPVSTPLSGIGTPTPSRSSGLELQVPRNVTTNVPLVSSRESQLVRPPLATSNSAFRPAQGFSGVGTVSGPPPTNSIISNDWVSERASGIQGTPSQPPNRGVSPAGMQVGFGQSSAGLTTSQPQRPQSAPGVMPAASSPVESKVQGISGNGTASGSYFGRDAFPATPVSSKQDVPAGNKTSTSVTVPVSSVTQPIVRATSLDSLQNSFMKPPLANQALRNQPHVKPNQQSILQPASSGLSTGLQNSVYGQSQRPWPRMTQNDVQKYTKVFVEVDKDRDGKITAQEARNLFLSWRLPREVLMQVWDLSDQDNDSMLSVREFCIALYLLERHREGHVLPAMLPSNIMFDFPSNGHPVTPAASNHSNAAWRTTAGHQQHQGVPGSGNLHGAPTIGVRPPIPAAALPVEDEPQTNQPKSKVPLLDKNLVSQLSTEEQNSLNSKFQEAEDAEKKVEELEKEILDSRQKIEYYRTKMQELILYKSRCDNRLNEISERVSSEKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYHTIVKMEQDISEDGVLQARADRIQSDIEELVKVLNERCKSYGLRAKPITLTELPFGWQPGIQVGAADWDEDWDKFEEEGFSVVKELTLDVQNVIAPPKQKSKSVQKEKGSTVDSQNVTPAADADAKEGGSAPDADTKGEKPPSIDETAVENGSAHDNKSENGSAKSAPNSPFAPKSAPSSPFATKSAPSSPFAPKSAPSSPFASSVIGSPKEYMDSSFGKAAGFDASPRAKDALSDHGGAGSVFSGDKSYDEPAWGAFDANDDIDSVWGFNAGGSTKADNDVTRDNYYFDSGDFGLNPIRTDPFQAKRSTFAFDESVPSTPLVNSGNSPNNYHDGSEPSFDSFSRFDSSSVHDSGFFPPKDTFTRFDSMRSSRDFDQGPGFSSFSQFDTTYNNRDFDQGGSSSLTRFDSMRSSKDFDQGSPSLSRFDSMRSSKDFDQGFPSLARFDSMRSSKDFDQGHGFPSFDDPDPFGSTGPFRASLDNQTPKKGSDNWSAF 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8073698 8081882 + CmoCh19G008190.1 Cmo19g00819 403979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 784 800 - -
Cmo19g00819 1150 Coils Coil 554 588 - -
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 1047 1089 - -
Cmo19g00819 1150 SUPERFAMILY EF-hand 370 463 IPR011992 -
Cmo19g00819 1150 Coils Coil 603 630 - -
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 1131 1150 - -
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 1047 1084 - -
Cmo19g00819 1150 SUPERFAMILY EF-hand 10 93 IPR011992 -
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 971 995 - -
Cmo19g00819 1150 ProSiteProfiles EH domain profile. 380 463 IPR000261 GO:0005515
Cmo19g00819 1150 Pfam Cytoskeletal-regulatory complex EF hand 374 445 IPR000261 GO:0005515
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 810 862 - -
Cmo19g00819 1150 Gene3D - 9 104 - -
Cmo19g00819 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Cmo19g00819 1150 CDD Prefoldin 579 688 - -
Cmo19g00819 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Cmo19g00819 1150 CDD EH 14 80 IPR000261 GO:0005515
Cmo19g00819 1150 SMART eh_3 372 468 IPR000261 GO:0005515
Cmo19g00819 1150 SMART eh_3 2 98 IPR000261 GO:0005515
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 121 140 - -
Cmo19g00819 1150 Pfam EF hand 15 31 IPR002048 GO:0005509
Cmo19g00819 1150 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 205 255 - -
Cmo19g00819 1150 PANTHER EH DOMAIN 9 1042 - -
Cmo19g00819 1150 PANTHER EH DOMAIN 1078 1150 - -
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 754 902 - -
Cmo19g00819 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 416 448 IPR002048 GO:0005509
Cmo19g00819 1150 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1078 1150 - -
Cmo19g00819 1150 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 9 1042 - -
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 1106 1150 - -
Cmo19g00819 1150 Gene3D - 375 464 - -
Cmo19g00819 1150 CDD EH 384 450 IPR000261 GO:0005515
Cmo19g00819 1150 SMART efh_1 13 41 IPR002048 GO:0005509
Cmo19g00819 1150 SMART efh_1 417 445 IPR002048 GO:0005509
Cmo19g00819 1150 SMART efh_1 383 411 IPR002048 GO:0005509
Cmo19g00819 1150 MobiDBLite consensus disorder prediction 205 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00819 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 1866.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01788 Cmo19g00819 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00045 Cmo-Chr9:182454 Cmo19g00819 Cmo-Chr19:8073698 0 dispersed
Cmo18g00563 Cmo-Chr18:4660656 Cmo19g00819 Cmo-Chr19:8073698 9.44E-14 dispersed
Cmo01g02079 Cmo-Chr1:14469978 Cmo19g00819 Cmo-Chr19:8073698 0 wgd
Cmo11g01788 Cmo-Chr11:12574035 Cmo19g00819 Cmo-Chr19:8073698 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00819 Cmo_Chr19 FPKM 0.174837 0.408692 3.280413 3.402952 3.440593 1.935887 3.121245 0.507875 0.503231 0.370288