Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00823 ATGGTATCTGACACGGTTGCTATCCTTGGTCCACAAGATGCTACTATGGGACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTACTATCATTTACAGCATTGGATCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGGCAGCAATAGCAGATATGATTAGTTATTACGGTTGGCACGACGTCGTCGTGCTTTACACCGACGATGATCAATGTCGAAACAGTATGTTCACATTAGGCGACAAAATCGAAAACAAAGGCTTGAAAATACCCTCTAAAGTAGCACTTCCCCCTTACCCAACAGCCACAAGAACTCAAGTTCACGACGCGCTCGTAAAGATTAAAATGATGGAATCTCGAGTTATCGTATTATATACGTTCTCGAAAACAGGTTTCTTGGTTTTCGAAATGGCTAAAAGCCTTGGAATGATGGAGGCTGGATATGTTTGGATAACCTCTAGTTGGCTATCAACAGTTATAGATTCTACTTCACCCCTTCCCTTGAAAACGGCTAACTCCATACAAGGCGTTCTTACGCTTCGGCTACATACACCCGAGTCGAAAAGGAAGCAATCGTTTATATCTCGTTGGAACGAGCTGAGTAATGGCTCGATTGGGTTGAATACTTATGGCCTATATGCATATGATACTGTTTGGATGATTGCAAGAGGATTGAAAGAGTTATTTGATCAAAATGGTACCATTTCTTTCTCCAAATATACACATGCTGGTAGTCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGAGTGTTTAATGAGGGAAATGAGCTGCTTAACAATCTATTGACTATCAGTATGATTGGCCTGACAGGGCCTATTCAGTTTCAAGATAGATACCCTTTGCATCCCTCATATGATATCTTGAATGTTGTGAAATCTGGTATGAAGAGGATTGGATATTGGTCGAACCATTCGGGGCTATCTGTCGTGGCGCCCGAAACGCTGTATGGAAAAGCAGTCAATCGTACCGAACAGTTAGGCAGCATGGTGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTTCCACTCGATGGAAGACGGTTAAGAATTGGCGTTCCACGCCGAGTTAGTTATCAGGAGTTTGTGACGCCCGGAAGTGGTAACGAAACGATTAAAGGATACTGCATTGACGTGTTCGTTGCTGCGGTCGAGTTGCTTCCATATGCTGTTAATTATGAGTTTGTTTTGTTTGGAGATGGCAAGGAGAATCCTAGCTACTTTGAGCTTGTTAATAATGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGATATTGCAATTGTGACGAGTCGTACCAAGATTGTCGATTTTACGCAGCCTTATATCGAGTCGGGGCTAATAGTGTTGGCCCCTGTGAAGAATTTGAACTCGAGTCCTTTGGCGTTCCTTCGCCCGTTCACACCGATGTTGTGGATTGTCTCGGCAGCATTTTTCCTTCTCATTGGATTAGTCGTGTGGATTTTGGAACGTCGAGATAATGACGAATTCCAAGGACATCCTAGGAAGCAATTCGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCATGAGCACGCCCGGTCGTTTCGTGCTTGTCATATGGCTTTTTGTGGTTCTAATTATAAACTCGAGCTACACCGCTAGTCTAACGTCGATATTCACGGTACAGCTAGCAACCTCACCTATCACAGGAATTGATTCATTGATATCTACCAATGTCCGTATAGGATTCCAAGTTGGTTCGTTTGCTGAAAGTTATTTAAGTGAGGAACTTAACGTCCACAAGTCAAGGCTCATTGCTCTTGGATCCCCAAAAGAGTATGCTGCTGCTCTCAAGAACGGCACGGTGGGCGCTATCGTTGACGAGCAGCCATACATCGATGTTTTTCTCGCCGAGTACTGCGATTATTCGACAAAAGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCGCGAGACTCTCCATTGGCGGGAGACTTGTCGACGGCCATACTCACTCTATCTGAGAATGGCGGTCTTCAAAAGATTCACGATCAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGATTCCAATCTCGATCAAGAACAACTTCACTTGCAGAGTTTCATTGGACTCTTCTCCATTTGTGCCGGCGTATGTTTCTTCGCACTTTTCCTGCATTTCTTCTTGACGATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGAGTAATCGCGTTTCCAACCCTACGCGTCTGCGCAAATTCTTATCGTTTGCAGATGCAAAGAGAGGAGGCTTATCGAAGAGAAAGATCGAAGATACACTCTCGAGTGAACGCGGAGAGAATTAG 2424 43.85 MVSDTVAILGPQDATMGHILSHLSNELHVPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMAAIADMISYYGWHDVVVLYTDDDQCRNSMFTLGDKIENKGLKIPSKVALPPYPTATRTQVHDALVKIKMMESRVIVLYTFSKTGFLVFEMAKSLGMMEAGYVWITSSWLSTVIDSTSPLPLKTANSIQGVLTLRLHTPESKRKQSFISRWNELSNGSIGLNTYGLYAYDTVWMIARGLKELFDQNGTISFSKYTHAGSLSGESLDFSSLGVFNEGNELLNNLLTISMIGLTGPIQFQDRYPLHPSYDILNVVKSGMKRIGYWSNHSGLSVVAPETLYGKAVNRTEQLGSMVWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGSGNETIKGYCIDVFVAAVELLPYAVNYEFVLFGDGKENPSYFELVNNVALKEFDAAVGDIAIVTSRTKIVDFTQPYIESGLIVLAPVKNLNSSPLAFLRPFTPMLWIVSAAFFLLIGLVVWILERRDNDEFQGHPRKQFVTILWFGFSTMFFAQRENVMSTPGRFVLVIWLFVVLIINSSYTASLTSIFTVQLATSPITGIDSLISTNVRIGFQVGSFAESYLSEELNVHKSRLIALGSPKEYAAALKNGTVGAIVDEQPYIDVFLAEYCDYSTKGQQFTKSGWGFAFPRDSPLAGDLSTAILTLSENGGLQKIHDQWFSRKSCSSGDSNLDQEQLHLQSFIGLFSICAGVCFFALFLHFFLTMCQFNRHLKQDPEASSNRVSNPTRLRKFLSFADAKRGGLSKRKIEDTLSSERGEN 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8110181 8115155 + CmoCh19G008230.1 Cmo19g00823 403983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00823 807 Gene3D - 366 482 - -
Cmo19g00823 807 SMART GluR_14 373 710 IPR001320 GO:0015276|GO:0016020
Cmo19g00823 807 Gene3D - 633 715 - -
Cmo19g00823 807 SUPERFAMILY Periplasmic binding protein-like II 349 710 - -
Cmo19g00823 807 SUPERFAMILY Periplasmic binding protein-like I 5 363 IPR028082 -
Cmo19g00823 807 CDD GluR_Plant 370 708 - -
Cmo19g00823 807 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 796 - -
Cmo19g00823 807 Gene3D - 483 622 - -
Cmo19g00823 807 PIRSF IGluLR_plant 1 804 IPR017103 -
Cmo19g00823 807 Pfam Ligand-gated ion channel 710 740 IPR001320 GO:0015276|GO:0016020
Cmo19g00823 807 PANTHER GLUTAMATE RECEPTOR 3.3 1 796 - -
Cmo19g00823 807 Pfam Receptor family ligand binding region 5 313 IPR001828 -
Cmo19g00823 807 Pfam Bacterial extracellular solute-binding proteins, family 3 386 709 IPR001638 -
Cmo19g00823 807 Gene3D - 3 303 - -
Cmo19g00823 807 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cmo19g00823 807 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cmo19g00823 807 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cmo19g00823 807 Gene3D - 55 328 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01791 Cmo19g00823 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00823 Cmo-Chr19:8110181 Cmo07g00376 Cmo-Chr7:1726781 0 dispersed
Cmo01g02083 Cmo-Chr1:14490476 Cmo19g00823 Cmo-Chr19:8110181 0 wgd
Cmo11g01791 Cmo-Chr11:12588834 Cmo19g00823 Cmo-Chr19:8110181 0 wgd
Cmo19g00823 Cmo-Chr19:8110181 Cmo03g00649 Cmo-Chr3:5886528 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00823 K05387 - csv:101208602 1290.02