Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00823 | ATGGTATCTGACACGGTTGCTATCCTTGGTCCACAAGATGCTACTATGGGACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTACTATCATTTACAGCATTGGATCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGGCAGCAATAGCAGATATGATTAGTTATTACGGTTGGCACGACGTCGTCGTGCTTTACACCGACGATGATCAATGTCGAAACAGTATGTTCACATTAGGCGACAAAATCGAAAACAAAGGCTTGAAAATACCCTCTAAAGTAGCACTTCCCCCTTACCCAACAGCCACAAGAACTCAAGTTCACGACGCGCTCGTAAAGATTAAAATGATGGAATCTCGAGTTATCGTATTATATACGTTCTCGAAAACAGGTTTCTTGGTTTTCGAAATGGCTAAAAGCCTTGGAATGATGGAGGCTGGATATGTTTGGATAACCTCTAGTTGGCTATCAACAGTTATAGATTCTACTTCACCCCTTCCCTTGAAAACGGCTAACTCCATACAAGGCGTTCTTACGCTTCGGCTACATACACCCGAGTCGAAAAGGAAGCAATCGTTTATATCTCGTTGGAACGAGCTGAGTAATGGCTCGATTGGGTTGAATACTTATGGCCTATATGCATATGATACTGTTTGGATGATTGCAAGAGGATTGAAAGAGTTATTTGATCAAAATGGTACCATTTCTTTCTCCAAATATACACATGCTGGTAGTCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGAGTGTTTAATGAGGGAAATGAGCTGCTTAACAATCTATTGACTATCAGTATGATTGGCCTGACAGGGCCTATTCAGTTTCAAGATAGATACCCTTTGCATCCCTCATATGATATCTTGAATGTTGTGAAATCTGGTATGAAGAGGATTGGATATTGGTCGAACCATTCGGGGCTATCTGTCGTGGCGCCCGAAACGCTGTATGGAAAAGCAGTCAATCGTACCGAACAGTTAGGCAGCATGGTGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTTCCACTCGATGGAAGACGGTTAAGAATTGGCGTTCCACGCCGAGTTAGTTATCAGGAGTTTGTGACGCCCGGAAGTGGTAACGAAACGATTAAAGGATACTGCATTGACGTGTTCGTTGCTGCGGTCGAGTTGCTTCCATATGCTGTTAATTATGAGTTTGTTTTGTTTGGAGATGGCAAGGAGAATCCTAGCTACTTTGAGCTTGTTAATAATGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGATATTGCAATTGTGACGAGTCGTACCAAGATTGTCGATTTTACGCAGCCTTATATCGAGTCGGGGCTAATAGTGTTGGCCCCTGTGAAGAATTTGAACTCGAGTCCTTTGGCGTTCCTTCGCCCGTTCACACCGATGTTGTGGATTGTCTCGGCAGCATTTTTCCTTCTCATTGGATTAGTCGTGTGGATTTTGGAACGTCGAGATAATGACGAATTCCAAGGACATCCTAGGAAGCAATTCGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCATGAGCACGCCCGGTCGTTTCGTGCTTGTCATATGGCTTTTTGTGGTTCTAATTATAAACTCGAGCTACACCGCTAGTCTAACGTCGATATTCACGGTACAGCTAGCAACCTCACCTATCACAGGAATTGATTCATTGATATCTACCAATGTCCGTATAGGATTCCAAGTTGGTTCGTTTGCTGAAAGTTATTTAAGTGAGGAACTTAACGTCCACAAGTCAAGGCTCATTGCTCTTGGATCCCCAAAAGAGTATGCTGCTGCTCTCAAGAACGGCACGGTGGGCGCTATCGTTGACGAGCAGCCATACATCGATGTTTTTCTCGCCGAGTACTGCGATTATTCGACAAAAGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCGCGAGACTCTCCATTGGCGGGAGACTTGTCGACGGCCATACTCACTCTATCTGAGAATGGCGGTCTTCAAAAGATTCACGATCAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGATTCCAATCTCGATCAAGAACAACTTCACTTGCAGAGTTTCATTGGACTCTTCTCCATTTGTGCCGGCGTATGTTTCTTCGCACTTTTCCTGCATTTCTTCTTGACGATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGAGTAATCGCGTTTCCAACCCTACGCGTCTGCGCAAATTCTTATCGTTTGCAGATGCAAAGAGAGGAGGCTTATCGAAGAGAAAGATCGAAGATACACTCTCGAGTGAACGCGGAGAGAATTAG | 2424 | 43.85 | MVSDTVAILGPQDATMGHILSHLSNELHVPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMAAIADMISYYGWHDVVVLYTDDDQCRNSMFTLGDKIENKGLKIPSKVALPPYPTATRTQVHDALVKIKMMESRVIVLYTFSKTGFLVFEMAKSLGMMEAGYVWITSSWLSTVIDSTSPLPLKTANSIQGVLTLRLHTPESKRKQSFISRWNELSNGSIGLNTYGLYAYDTVWMIARGLKELFDQNGTISFSKYTHAGSLSGESLDFSSLGVFNEGNELLNNLLTISMIGLTGPIQFQDRYPLHPSYDILNVVKSGMKRIGYWSNHSGLSVVAPETLYGKAVNRTEQLGSMVWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGSGNETIKGYCIDVFVAAVELLPYAVNYEFVLFGDGKENPSYFELVNNVALKEFDAAVGDIAIVTSRTKIVDFTQPYIESGLIVLAPVKNLNSSPLAFLRPFTPMLWIVSAAFFLLIGLVVWILERRDNDEFQGHPRKQFVTILWFGFSTMFFAQRENVMSTPGRFVLVIWLFVVLIINSSYTASLTSIFTVQLATSPITGIDSLISTNVRIGFQVGSFAESYLSEELNVHKSRLIALGSPKEYAAALKNGTVGAIVDEQPYIDVFLAEYCDYSTKGQQFTKSGWGFAFPRDSPLAGDLSTAILTLSENGGLQKIHDQWFSRKSCSSGDSNLDQEQLHLQSFIGLFSICAGVCFFALFLHFFLTMCQFNRHLKQDPEASSNRVSNPTRLRKFLSFADAKRGGLSKRKIEDTLSSERGEN | 807 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8110181 | 8115155 | + | CmoCh19G008230.1 | Cmo19g00823 | 403983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00823 | 807 | Gene3D | - | 366 | 482 | - | - | |
Cmo19g00823 | 807 | SMART | GluR_14 | 373 | 710 | IPR001320 | GO:0015276|GO:0016020 | |
Cmo19g00823 | 807 | Gene3D | - | 633 | 715 | - | - | |
Cmo19g00823 | 807 | SUPERFAMILY | Periplasmic binding protein-like II | 349 | 710 | - | - | |
Cmo19g00823 | 807 | SUPERFAMILY | Periplasmic binding protein-like I | 5 | 363 | IPR028082 | - | |
Cmo19g00823 | 807 | CDD | GluR_Plant | 370 | 708 | - | - | |
Cmo19g00823 | 807 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 1 | 796 | - | - | |
Cmo19g00823 | 807 | Gene3D | - | 483 | 622 | - | - | |
Cmo19g00823 | 807 | PIRSF | IGluLR_plant | 1 | 804 | IPR017103 | - | |
Cmo19g00823 | 807 | Pfam | Ligand-gated ion channel | 710 | 740 | IPR001320 | GO:0015276|GO:0016020 | |
Cmo19g00823 | 807 | PANTHER | GLUTAMATE RECEPTOR 3.3 | 1 | 796 | - | - | |
Cmo19g00823 | 807 | Pfam | Receptor family ligand binding region | 5 | 313 | IPR001828 | - | |
Cmo19g00823 | 807 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 386 | 709 | IPR001638 | - | |
Cmo19g00823 | 807 | Gene3D | - | 3 | 303 | - | - | |
Cmo19g00823 | 807 | PRINTS | Metabotropic glutamate GPCR signature | 59 | 75 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Cmo19g00823 | 807 | PRINTS | Metabotropic glutamate GPCR signature | 40 | 59 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Cmo19g00823 | 807 | PRINTS | Metabotropic glutamate GPCR signature | 8 | 34 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Cmo19g00823 | 807 | Gene3D | - | 55 | 328 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01791 | Cmo19g00823 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo19g00823 | Cmo-Chr19:8110181 | Cmo07g00376 | Cmo-Chr7:1726781 | 0 | dispersed | |
Cmo01g02083 | Cmo-Chr1:14490476 | Cmo19g00823 | Cmo-Chr19:8110181 | 0 | wgd | |
Cmo11g01791 | Cmo-Chr11:12588834 | Cmo19g00823 | Cmo-Chr19:8110181 | 0 | wgd | |
Cmo19g00823 | Cmo-Chr19:8110181 | Cmo03g00649 | Cmo-Chr3:5886528 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00823 | K05387 | - | csv:101208602 | 1290.02 |