Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00830 ATGGAGAGCGCATCGGAGCTAGTGCCATTTCCACTGCTGCTCACACCGATTGAGTCCAATTACAGAGCCTGCACCATCCCTTACCGTTTCCCTTCCGATAATCCTCGCAAGCCCACGCCCATTGAGCTCTCATGGATCGACGTCTTCTACAATTCCATCCCTTCCTTCAAAGAACGGGCGGCGAGTGATCCCACAGTCCCAGATGCCGAGACTAAAGCTGAAAAATTTGCCCAGAGGTATGCTCAAATACTTGATGACATGAAGAAAGATCCTGAAAGTCATGGAGGACCTCCCGACTGCATTGATGAAGAGAATGCAAAGGCTATATCCTTATTTGCTGAGGTCATTCGCCTGAATGATGCCATTGAAGATGATAATAAGCGCTTGGAGAATCTGGTTAAAGGAATATTTGCTGGGAACATTTTTGATCTTGGTTCGGCTCAGCTAGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTTAGCGAGTTGTCAAAATCTTGTTCCTCGACCTTGGGTGATTGATGATTTGGACACGTTCAAACTCAGATGGAGTAAAAAGTCATGGAAGAAGGTTATAATGTTTGTTGATAATTCCGGTGCAGATATTATTTTGGGCATTTTGCCATTTGCTAGAGAGTTACTCCGGCGCGGAACTCAGGTTGTCTTGGCGGCCAATGACTTGCCCTCGATTAACGATGTAACTTATCATGAGCTAATTGAAATTTTATCGCAGCTGAAGGATGACCGTGGAGAGCTTGTGGGCGTCAATACTGCCAACCTTTTAATTGCCAATTCTGGCAACGATTTGCCGGTCATTGACCTCACTCAAGTATCCCAGGAGCTTAGCTACCTGTCAACTGATGCAGATCTAGTTATCTTGGAAGGAATGGGTCGTGGAATTGAGACAAATCTTTATGCTCGATTTAAGTGCGATTCGCTAAAGATCGGCATGGTAAAGCATCTGGAGGTTGCACAATTTCTTGGAGGAAGGCTCTACGATTGCGTCTTCAAGTACAACGAAGTTTCTAGTTGA 1035 45.12 MESASELVPFPLLLTPIESNYRACTIPYRFPSDNPRKPTPIELSWIDVFYNSIPSFKERAASDPTVPDAETKAEKFAQRYAQILDDMKKDPESHGGPPDCIDEENAKAISLFAEVIRLNDAIEDDNKRLENLVKGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLDTFKLRWSKKSWKKVIMFVDNSGADIILGILPFARELLRRGTQVVLAANDLPSINDVTYHELIEILSQLKDDRGELVGVNTANLLIANSGNDLPVIDLTQVSQELSYLSTDADLVILEGMGRGIETNLYARFKCDSLKIGMVKHLEVAQFLGGRLYDCVFKYNEVSS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8145648 8150575 - CmoCh19G008300.1 Cmo19g00830 403990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00830 344 Pfam Damage-control phosphatase ARMT1-like domain 102 332 IPR002791 -
Cmo19g00830 344 PANTHER BNAC03G47610D PROTEIN 9 100 - -
Cmo19g00830 344 PIRSF UCP030210 7 102 IPR016949 -
Cmo19g00830 344 PIRSF UCP030210 101 344 IPR016949 -
Cmo19g00830 344 PANTHER PANTOTHENATE KINASE 9 100 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cmo19g00830 344 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 173 343 - -
Cmo19g00830 344 PANTHER PANTOTHENATE KINASE 102 342 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cmo19g00830 344 Gene3D - 28 121 IPR035073 -
Cmo19g00830 344 SUPERFAMILY AF1104-like 9 341 IPR036075 -
Cmo19g00830 344 PANTHER BNAC03G47610D PROTEIN 102 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00830 K24854 K24854; damage-control phosphatase, subfamily II, stand-alone protein [EC:3.1.3.-] - csv:101221235 628.632
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g307 . . . . . Bpe12g00157 . . Cmo19g00830 . . . . . . . Cpe15g00651 Bhi05g01551 Tan02g0548 . . Hepe02g0351 . . . . . . . . . . . Cone3ag1254 Cone10ag1207 . Csa07g00208 . . Blo04g00611 Blo13g00465 . . Bpe15g00776 . Bma03g00643 Bma08g00710 . . . . . . Car19g00627 . . . . . . . . . . . . . . . . Lsi11g01303 . Chy01g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007984 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00830 Cmo_Chr19 FPKM 10.802898 10.905098 14.315278 16.007862 13.102903 12.866033 10.752679 18.726425 19.30245 19.443151