Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00834 ATGGCTTTCTGCTCTGTAGCCTCTGTATCTGCCGCCGCCATTTTCATAAAGCCTCAAACCCTTCGTTCTACCTCGATAATGGCAGAAATGGAGGCTCCAACTGTAGTAGTCTACTTGGTTCTTCTGCAAACACCCAATCTCTTTGCGGCTAAGGATGAAGAGTGGAAATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCCATTGTTACAGGTACTCTTCTCCTTCGTCTGAAAGCTCATAAGATTATATTAGTGTTTAAACATGGTGATGGTGCTTTTCTGGAAGGTGCATGTGGATATGGAGATCTGCATAAAATTAGCTATGGAAAATATAGCGCAGGATTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACCGTCGTTCTAACAGCCACCGACTTCTGTCCTCCAAATTACGGCCTATCTTCCGATTATGGTGGTTGGTGTAATTTTCCGAAAGAACATTTTGAGATGTCAGAGGCAGCATTTGCTGAAATATCAGAGAAAAAAGCAGATATTGTACCAGTTCAATATAGGAGGACGAGGTGTGATCGAAGCGGTGGATTGAGGTTCACGGTTAGTGGAAATTCTCGTTTCTTTCAAGTTCTGATTACCAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAGGTAAAAGGATCAAGAACAGGATGGATACCAATGGCAAGGAACTGGGGACAGAACTGGCAAAGCAATGTCAATCTTCATGGGCAACCTCTCTCTTTCGAAGTTACCTCAAGCAGTGGAAGAACACTTACTTCCTACAGCGTTGCACCTGCAAACTGGCAGTTTGGGCAGACATTTGAAGGAAAACAATTTTGA 912 43.75 MAFCSVASVSAAAIFIKPQTLRSTSIMAEMEAPTVVVYLVLLQTPNLFAAKDEEWKSATATYSKETDGSIVTGTLLLRLKAHKIILVFKHGDGAFLEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVVLTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEISEKKADIVPVQYRRTRCDRSGGLRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPMARNWGQNWQSNVNLHGQPLSFEVTSSSGRTLTSYSVAPANWQFGQTFEGKQF 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8165813 8167779 + CmoCh19G008340.1 Cmo19g00834 403994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00834 303 PANTHER EXPANSIN-A20 35 303 - -
Cmo19g00834 303 Pfam Lytic transglycolase 115 201 IPR009009 -
Cmo19g00834 303 SUPERFAMILY Barwin-like endoglucanases 94 229 IPR036908 -
Cmo19g00834 303 SUPERFAMILY PHL pollen allergen 208 300 IPR036749 -
Cmo19g00834 303 PRINTS Expansin signature 109 123 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 186 199 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 257 278 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 136 147 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 169 186 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 150 160 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 286 302 IPR002963 GO:0009664
Cmo19g00834 303 PRINTS Expansin signature 210 222 IPR002963 GO:0009664
Cmo19g00834 303 SMART dpbb_1 114 201 IPR007112 -
Cmo19g00834 303 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Cmo19g00834 303 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Cmo19g00834 303 PRINTS Expansin/Lol pI family signature 286 300 IPR007118 GO:0005576
Cmo19g00834 303 PANTHER EXPANSIN-A15 35 303 IPR002963 GO:0009664
Cmo19g00834 303 Gene3D - 41 207 IPR036908 -
Cmo19g00834 303 Gene3D - 211 303 IPR036749 -
Cmo19g00834 303 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 97 211 IPR007112 -
Cmo19g00834 303 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 221 300 IPR007117 -
Cmo19g00834 303 Pfam Expansin C-terminal domain 213 289 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01802 Cmo19g00834 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00834 Cmo-Chr19:8165813 Cmo20g00433 Cmo-Chr20:2031500 3.01E-88 dispersed
Cmo11g01802 Cmo-Chr11:12638289 Cmo19g00834 Cmo-Chr19:8165813 3.86E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00834 - - csv:101213241 477.633