Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00838 ATGGATAATGAAGTGATTGAGTTCGATATTGGATTGGGAGGAGGAAGTGGTAGGGAGGGAGATGACTATTCTATTGGTATGGTGCATCATTCCATCGAGGATGAAGAAATGGTTGATAGCCCTCCTCTGAGTAGCCTTGGTGGTGGCGCTGGCAGTGGTGAGATATATCTTCCGGAGGGTGATCTTTTGGATCTTGAACCTTATGAAGGAATGGAATTCGAGTCTGAAGAGGCTGCCAAAGCATTCTATAATTCATATGCTCGACGTGTTGGGTTCAGTACTCGTGTCAGCTCGTCTCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTCAGGAATATGAATGAGAAGCGAACTAAAGATAGGGAAATTAAGCGCCCTCGAACCATCACTAGAGTGGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTCTCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGATCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTCTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACTGAGGTTGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCGAACTTCTTCTATGCGGTGCAGGGTGAGGAGGATCAGTGTGTGGGCAATGTCTTTTGGGCCGATCCAAAGGCTCGGATGAACTATACTTACTTTGGGGATACCGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCTTTCACCGGGGTGAATCACCATGGACAGCCCGTGTTATTTGGCTGTGCTTTTCTAATAAATGAATCTGAAGCATCATTTAATTGGCTATTTAGAACGTGGCTTTTGGCAATGTCTGGTCGCCCACCTGTGTCAATTACTACCGATCATGATGCAATAATACAGTCAGCCATTACACAAGTTTTCCCGGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTTTCTCATGTGTTTCTGAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAATTTGACCGACTCTATCGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATATGATCTCAGGGATCATGAGTGGCTTCAAACAATTTACTCTGCTCGGAGGCAGTGGGTTCCGGTGTATTTGCGGGATACTTTTTTCGCTGAAATGTCTATTACCCAGCGAAGTGATAGTATGAATTCATATTTTGATGGGTACGTGAATGCTTCGACCAATTTGAGTCAGTTCTTCAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTAAAAACTCCATCTCCAATGGAAAAACAAGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGATTCCAAGAGGAGTTAGTTGGCACATTAACTTTTATGGCGTCGAAGGCTGATGACGATGGGGACATTATAACATATCAAGTGGCCAAATTTGGCGAGGATCATAAAGCTCACTATGTGAAATTCAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTCGAGTTCTCAGGCCTTCTGTGCGGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTATTACATATTGAAACGATGGACAAGAAATGCGAAGAGTAACATAATGTTGGATAACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTACGCCACGAGGCTTTTAAATTCATTGAGGAAGGAGCAAAGACTGTGGATACGTATAATGTGGCAAAAGATGCCCTTCAAGAGGCTGCAAAAAGGGTTGCTCATACAACGAGGAATGATGGAAAAAATTCTACAATCAATGGGCGAATTAAAATGGACCCTGGAAATGACAGAAGCTATACATATCATAGTAGTAGCAGGGATCACGACGAGATATTGAGTAAAAACATGTCGGAGGATGACTTGGACAAGAAAATCAACGAGCTTACCAATGAATTGGAGTGTGCAAATCGGAAGTGCGACGTTTACCGGTCTAACCTTTTTTCAATGCTGAAAGACATTGAGGACCACAAACTGCAATTATCTATTAAAGTGCAGAACATAAAAATTAGTATGAAAGATAGCATTTGA 2373 42.27 MDNEVIEFDIGLGGGSGREGDDYSIGMVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDAIIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGDIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCGHILAVFRVTNVLTLPSYYILKRWTRNAKSNIMLDNHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTVDTYNVAKDALQEAAKRVAHTTRNDGKNSTINGRIKMDPGNDRSYTYHSSSRDHDEILSKNMSEDDLDKKINELTNELECANRKCDVYRSNLFSMLKDIEDHKLQLSIKVQNIKISMKDSI 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8202638 8205592 + CmoCh19G008380.1 Cmo19g00838 403998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00838 790 SMART 26again6 585 612 IPR006564 GO:0008270
Cmo19g00838 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Cmo19g00838 790 MobiDBLite consensus disorder prediction 716 730 - -
Cmo19g00838 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
Cmo19g00838 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 763 IPR031052 GO:0006355
Cmo19g00838 790 MobiDBLite consensus disorder prediction 690 730 - -
Cmo19g00838 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 40 763 - -
Cmo19g00838 790 Coils Coil 733 760 - -
Cmo19g00838 790 Pfam SWIM zinc finger 562 608 IPR007527 GO:0008270
Cmo19g00838 790 Pfam MULE transposase domain 294 387 IPR018289 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00838 - - - csv:101218471 1514.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01806 Cmo19g00838 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01034 Cmo-Chr10:5437557 Cmo19g00838 Cmo-Chr19:8202638 0 dispersed
Cmo11g00811 Cmo-Chr11:4023495 Cmo19g00838 Cmo-Chr19:8202638 0 dispersed
Cmo13g00877 Cmo-Chr13:7958155 Cmo19g00838 Cmo-Chr19:8202638 4.20E-142 dispersed
Cmo16g00537 Cmo-Chr16:2608907 Cmo19g00838 Cmo-Chr19:8202638 5.11E-145 dispersed
Cmo17g01308 Cmo-Chr17:10243746 Cmo19g00838 Cmo-Chr19:8202638 6.43E-24 dispersed
Cmo19g00870 Cmo-Chr19:8375183 Cmo19g00838 Cmo-Chr19:8202638 1.18E-63 dispersed
Cmo11g01806 Cmo-Chr11:12670409 Cmo19g00838 Cmo-Chr19:8202638 0 wgd
Cmo19g00838 Cmo-Chr19:8202638 Cmo20g00702 Cmo-Chr20:3464698 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11650 PF10551 MULE 5.60E-29 CL0219 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00838 Cmo_Chr19 FPKM 2.703833 2.000386 3.938361 3.871532 9.553561 8.410492 7.570215 6.619481 6.202354 8.002375