Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00842 ATGAGTAAAATGTTTGTGTGTAAGAGAGATTCAAGTACCTTGGTTGCTGTGGTTGTGGCTTCTTTGGTATTGCTCTTTGGAGCAGTGGGCAGCCAAACGATCCGTGAGCGTCGTTTTTCGTATGTTCGATTCAATGAAAGGGAGCATAATCAAGACTTCATCTTCACCGGAGGCTCTTCCATCGATGGTGGGGCGCTGCAGTTAACTCCTGACTCGCAGAACAATGTTGTTAGCCTTCAAAATACATTTGGCCGCATTGTGTACCACCAGCCGTTCAAGTTATGGCTAGCTGATATTGATAAAAAGGAGGAAGATGACATTGTTGCTTCATTCAGCTCATACTTTTACATCAATATTTTCAGAAATAAAGAATGGAATGCTGGTGAGGGGCTTACTTTTCTTATAGCTCCGACTGCTGATGCACCTGAACAGAGCTGGGGGCAGTGGATGGGCCTCACCAATGCAACCACCGACGGTGACAGCAGAAATCAAATTGTAGCTATCGAATTTGATACCGAGAAGCAGGATTTCGACCCCGACGACAACCATATTGGTCTGAACATCAACTCCATTAAGTCAAGGAAGGCTGTTTCACTGAATAAATCTGGCATAGTTTTATCCCCAGAGACCGGAACTAATCACAGTATCTGGGTTGATTATGATGGCAAAGCCAAACTTTTGCAGGTTTACATGTCTATAAACAAAGATCCAAAACCTGATAAACCGCTTCTCAATGAAACGATAAACCTGAAACGATTTGTGAAACAAGAATCATACATTGGATTCTCTGCTTCTACAGGCAGCCCAGAGATTCAGTTGAACTGTGTCTTGGAATGGACACTGGATTTGGAACGTCTGCCGGAGAAGAAAAATCTAACGTGGTTGAAGATCCTTGCCGGAGTTGGAATTCCGATACTAATCGCAATTCTTATTGGGGTTTGGTTATTTGTTGATTATAGGAAGAAGAGGAGAGTGAGTAGGGATGAGGAGTCAAATGTTCAGGGCACATTGAAGAGGTTGCCTGGAATGCCTAGAGAGTTCAAGTACAAGGAACTAAAAAGGGCGACTCATAACTTCCATGAAAGCATGGTTCTAGGAAATGGGGGATTCGGGGTCGTGTACAAAGGCGTTTTGCAGGACAAGGATAAGGACATTACCACATCTTCAAATTCTGTTTCCAGGCTTGAAATTGCCGTCAAGAAATTCTCCAGGGACAGCATTAAGAGCGAAGGCGATTTTCTGGATGAGCTCACCATTATCCACCGTCTTCGCCACAAGAACCTCGTCCGTTTAGAAGGGTGGTGCTATGAGAAAGGGAAGCTTTTATTAGTGTACGACTTTATGCCTAACGGAAGCGTCGAGAATCACCTATACGATGTTGCTGACGAGGATGCTCTCAGCTGGAGACATCGCTATAAAATTCTTGTAGGAGTTGCATCTGCGTTGCATTACTTGCATAATTTGTATGACCAGAAAGTATTGCACCGAGATATCAAATCAAGCAATATCTTGCTCGATTCCGACTTCAATGCTCGTCTAGGGGATTTCGGCCTTGCTAGAGCCTTGGATCCTGAAAGAAACTCTTATGCAGACCTGCAGTGTGGTGGAGTTGCAGGCACAATGGGTTATGTTGCTCCTGAATGCTTCCATGAAGGGAAGGCTACTCCTGAAACCGATGTATATGGTTTTGGGGCAGTCGTGCTCGAGATCATTTGTGGCAGGAGACCAGGAGCTGCTATTGAAGACAAGCAAAATCTGTGTACTCTAATTGATTGGGTGTGGAAGGGACACCGTGAAGGACACATCGAAAAAGCTGTCGATAACCGGCTGGGCAATGGTTTTGTGGTTGATGAAGCTAGGAGGCTTCTACTACTTGGGTTGGCATGTACACATCCCACGGCAAGCGAAAGGCCACAAACTCAGGCTATACTCCAAATTTTAAACGGAGCTTTGCCAGCACCTCAAGTACCTCTGTTCAAGCCAGCCTTCATGTGGCCTCCCATGAGCACTACTTCAACCAATACCACTCTCACTTCACTGTCAAACACGAACAGCTCTCTTCCATGA 2067 45.09 MSKMFVCKRDSSTLVAVVVASLVLLFGAVGSQTIRERRFSYVRFNEREHNQDFIFTGGSSIDGGALQLTPDSQNNVVSLQNTFGRIVYHQPFKLWLADIDKKEEDDIVASFSSYFYINIFRNKEWNAGEGLTFLIAPTADAPEQSWGQWMGLTNATTDGDSRNQIVAIEFDTEKQDFDPDDNHIGLNINSIKSRKAVSLNKSGIVLSPETGTNHSIWVDYDGKAKLLQVYMSINKDPKPDKPLLNETINLKRFVKQESYIGFSASTGSPEIQLNCVLEWTLDLERLPEKKNLTWLKILAGVGIPILIAILIGVWLFVDYRKKRRVSRDEESNVQGTLKRLPGMPREFKYKELKRATHNFHESMVLGNGGFGVVYKGVLQDKDKDITTSSNSVSRLEIAVKKFSRDSIKSEGDFLDELTIIHRLRHKNLVRLEGWCYEKGKLLLVYDFMPNGSVENHLYDVADEDALSWRHRYKILVGVASALHYLHNLYDQKVLHRDIKSSNILLDSDFNARLGDFGLARALDPERNSYADLQCGGVAGTMGYVAPECFHEGKATPETDVYGFGAVVLEIICGRRPGAAIEDKQNLCTLIDWVWKGHREGHIEKAVDNRLGNGFVVDEARRLLLLGLACTHPTASERPQTQAILQILNGALPAPQVPLFKPAFMWPPMSTTSTNTTLTSLSNTNSSLP 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8211605 8213908 + CmoCh19G008420.1 Cmo19g00842 404002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00842 688 SUPERFAMILY Protein kinase-like (PK-like) 342 679 IPR011009 -
Cmo19g00842 688 Gene3D Transferase(Phosphotransferase) domain 1 448 663 - -
Cmo19g00842 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Cmo19g00842 688 Gene3D Phosphorylase Kinase; domain 1 344 447 - -
Cmo19g00842 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 295 IPR013320 -
Cmo19g00842 688 Gene3D - 36 297 - -
Cmo19g00842 688 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 13 686 - -
Cmo19g00842 688 PANTHER - 13 686 - -
Cmo19g00842 688 CDD lectin_legume_LecRK_Arcelin_ConA 39 281 IPR001220 GO:0030246
Cmo19g00842 688 Pfam Protein kinase domain 359 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00842 688 Pfam Legume lectin domain 38 292 IPR001220 GO:0030246
Cmo19g00842 688 SMART serkin_6 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00842 688 ProSiteProfiles Protein kinase domain profile. 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00842 - - - cpep:111792914 1156.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01827 Cmo19g00842 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00410 Cmo-Chr14:1947124 Cmo19g00842 Cmo-Chr19:8211605 5.09E-119 dispersed
Cmo19g00842 Cmo-Chr19:8211605 Cmo16g01000 Cmo-Chr16:6893728 6.21E-131 dispersed
Cmo11g01827 Cmo-Chr11:12781870 Cmo19g00842 Cmo-Chr19:8211605 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75109 PF07714 PK_Tyr_Ser-Thr 4.50E-42 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00842 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0