Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00847 ATGAAAAAGTTGAACCGGACAAATTCCATATGGTCTACCGACATCGCAGCTAGCATTGATACATACCCAGAAAAGAAAACAACTGCTGGTATATCAGGCAAAATGATGTTTAGTAATAGAAAGAGATCACTGTTGCGCAAAATATCCCCATTGGAGCTTCTTCCTTGCAGTATCTTCCGGACACGTGCAAGAGAGAAAGATCAAAAAATGGATGAGAAGAGTGAAACCAAAGAGCCATCAAAGTCTAATCTGTCATATCCTTCTCATCAAATCAGCCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGAAAGTTTAGGAGATGACCATTCCAAAGGAGAGAGTGATGCCACTCATGATCAGGTTGGGGCAAAATCAACCGACACTTCCTTTTGTCCTGCTGCCAGCATGAAAGCATCTAAAAAGTGGATGGCATTTGAAAGTGAAAACTTAGATACAACAAAGACATACACAAAGAGCTTCAGTGGTAGCTTTGGGTCGTCTTTTACTGAACTCTTGGAAACAACCATGACAAAAAAGACTGCAGAGAAGAATAAGATCGACGATTTATCGTCGTTGACGTACGTTATCTCAGATGCAACAAAACCGGATTGCCCCATCGTGTTTGCCAGTGATAGGTTCTTGGTTATGACTGGATATACATTGGAGGAGCTCATTGGAAGGAACTGCCGTTTTCTTCAAGGACCGGAGACGGATAAGAACGAAGTAGCAAAAATACGAGATGCAATCGGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAGGATTCCCATGGCAACATCATCAAGTTTATCGGAATGCAGGTTGAAATTGGCAAAAACACAGAAGAAAAAGAAAAGTCCATGAGGTCGTCCATGTCCATGACAGAGGTCCAAGCTGAGAAGGTAATTAAGTCCATTGAGGTCGAGGCTGCGAAAAGCCTAAGATCTTCCGTTCAGTCAAAAAGACACGATGCAGATAGAAAGCCCGAAGAGCCAGAAACGACTGGCGAGAATACTAGCACAGCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCTAGGCTCTGCAGTCGAACGTGAAGAACAGACCGTTGTTGAGACATCTGTTTTCAAGCTTGGGGACGGTGATCGTATCGCTACAAGAGAAAGGGACATACGTCAAGGAATTCAGTTGGCTACCACATTGGAACGAATTGAGAAGAAATTTTTTATCACGAACCCAAGACTTCCTGATAATCCTATTATATTTGCATCTCGAAGGTTTCTTCATTCCACCGAATACACGTGCGAAGAAGTTCTTGGGAGAAACTTTTGGTTTCTTCAGGGACTTGAAACAGATCAAGTAACTGTCTCAAAGATAAACGATGCAATTGAAGAACAAAGAGAAATCACCCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTTGAATTTGTTCCACTTGCAACCCGTGTATGATCAAAAGAAGGGCGAGCTTCAATATTTCATTGGCGTGCTACTTCATCTAAAACGTTCGAAAGACCGGCTTTTAGATCGGATGAAGCATGAACGAACTAAGCTGGTCAAAGATATAGCAGAAAGTGTCGACAGGGCTGTCCGAGAACTTCCCGACGCCAACTTGAAACCAAGGAATTTCTGGGAAATTTACTGTCAGCCAGTCTTACCAAGGCCTCACAAGAAGTATAGTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATAGGACTCCATCATTTTAAGCCAATAAAACCTCTGGGTTTTGGAGACATTGGAAGTGTTCATTTGGTAGAACTGAATGGAACAGGTGAACTCTTTGCAATGAAGGTTATAGAGAAGTCAGTAATATTAAATCGTAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACACGTACGCACATTTTTCTGATAATGGACTTCTGCCCGGGCGGAGAGTTATTTACGTTTCTTGACAATCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTGGGTTCTATGCTGCAGAAGTTGTCATTGCTTTAGAGTACCTTCACTGTTTAGGTATTGTCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAAAAAGATGGACATATCGTCCTCACTGATTTCGATTTATCATTTAAGACGTCAAATATACAAACCACAAAATCTCCACCCCGGAAACGGATTAAGGGATCTTGGCATAGATTGGTGCCGACGTTCGTTGCTGAACCGATTGTACAACTGAATTCATTCGTAGGAACTGAAGAGTACATTGCTCCCGAGATCATTATGGGAGCTGGCCATAATAGTTCTATTGACTGGTGGACTCTTGGTATTTTGCTGTATGAAATGCTCTATGGTCGCACACCCTTCAAAGGCAAGAACAGGAAGAAAACCTTTTCCAATATTTTGTTCAAGGACTTGACCTTTCCCCTTAGTATTAAGGTGAGTCTTGCAGGAAAGCAGCTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCAAGTACCGGTTCCGATGAAATCAAACGACATCCATTTTTCCGTCATATAAACTGGCCTAAGATACGAACAATGACTCCACCATCAACAGAAGTAGCCCTTCAGTTATTTGAGAGAGATCCAAAGGCTAATGATTTGAAGTGGGAAGATGGAGTGCTCAGTCACTCGATAGGCTCTGATATATTCTGA 2829 42.17 MKKLNRTNSIWSTDIAASIDTYPEKKTTAGISGKMMFSNRKRSLLRKISPLELLPCSIFRTRAREKDQKMDEKSETKEPSKSNLSYPSHQISPTEKRTPIEVFQVPESLGDDHSKGESDATHDQVGAKSTDTSFCPAASMKASKKWMAFESENLDTTKTYTKSFSGSFGSSFTELLETTMTKKTAEKNKIDDLSSLTYVISDATKPDCPIVFASDRFLVMTGYTLEELIGRNCRFLQGPETDKNEVAKIRDAIGKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIGKNTEEKEKSMRSSMSMTEVQAEKVIKSIEVEAAKSLRSSVQSKRHDADRKPEEPETTGENTSTADNQKARFKERTLGSAVEREEQTVVETSVFKLGDGDRIATRERDIRQGIQLATTLERIEKKFFITNPRLPDNPIIFASRRFLHSTEYTCEEVLGRNFWFLQGLETDQVTVSKINDAIEEQREITLQIINYTKSGKKFLNLFHLQPVYDQKKGELQYFIGVLLHLKRSKDRLLDRMKHERTKLVKDIAESVDRAVRELPDANLKPRNFWEIYCQPVLPRPHKKYSPSWIAIQKITSHGEKIGLHHFKPIKPLGFGDIGSVHLVELNGTGELFAMKVIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTRTHIFLIMDFCPGGELFTFLDNQPMKMFKEEAAGFYAAEVVIALEYLHCLGIVYRDLKPENILLQKDGHIVLTDFDLSFKTSNIQTTKSPPRKRIKGSWHRLVPTFVAEPIVQLNSFVGTEEYIAPEIIMGAGHNSSIDWWTLGILLYEMLYGRTPFKGKNRKKTFSNILFKDLTFPLSIKVSLAGKQLIDALLQRDPARRLGSSTGSDEIKRHPFFRHINWPKIRTMTPPSTEVALQLFERDPKANDLKWEDGVLSHSIGSDIF 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8226861 8238378 - CmoCh19G008470.1 Cmo19g00847 404007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00847 942 SMART pac_2 260 302 IPR001610 -
Cmo19g00847 942 SMART pac_2 487 530 IPR001610 -
Cmo19g00847 942 CDD STKc_phototropin_like 606 908 - -
Cmo19g00847 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Cmo19g00847 942 MobiDBLite consensus disorder prediction 80 97 - -
Cmo19g00847 942 Gene3D PAS domain 399 560 - -
Cmo19g00847 942 CDD PAS 210 299 IPR000014 -
Cmo19g00847 942 MobiDBLite consensus disorder prediction 64 131 - -
Cmo19g00847 942 Gene3D Transferase(Phosphotransferase) domain 1 692 908 - -
Cmo19g00847 942 MobiDBLite consensus disorder prediction 335 376 - -
Cmo19g00847 942 ProSiteProfiles PAC domain profile. 257 311 IPR000700 -
Cmo19g00847 942 ProSiteProfiles Protein kinase domain profile. 608 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00847 942 MobiDBLite consensus disorder prediction 64 79 - -
Cmo19g00847 942 PANTHER BNAC03G12530D PROTEIN 196 941 - -
Cmo19g00847 942 SUPERFAMILY Protein kinase-like (PK-like) 585 916 IPR011009 -
Cmo19g00847 942 MobiDBLite consensus disorder prediction 338 356 - -
Cmo19g00847 942 MobiDBLite consensus disorder prediction 108 124 - -
Cmo19g00847 942 Gene3D PAS domain 198 355 - -
Cmo19g00847 942 TIGRFAM sensory_box: PAS domain S-box protein 436 522 IPR000014 -
Cmo19g00847 942 TIGRFAM sensory_box: PAS domain S-box protein 210 307 IPR000014 -
Cmo19g00847 942 Gene3D Phosphorylase Kinase; domain 1 607 691 - -
Cmo19g00847 942 PANTHER FLIPPASE KINASE 1-RELATED 196 941 - -
Cmo19g00847 942 SUPERFAMILY PYP-like sensor domain (PAS domain) 426 523 IPR035965 -
Cmo19g00847 942 SUPERFAMILY PYP-like sensor domain (PAS domain) 204 297 IPR035965 -
Cmo19g00847 942 Pfam Protein kinase domain 610 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00847 942 ProSiteProfiles PAS repeat profile. 210 256 IPR000014 -
Cmo19g00847 942 SMART serkin_6 608 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00847 942 CDD PAS 433 527 IPR000014 -
Cmo19g00847 942 Pfam PAS domain 204 299 IPR000014 -
Cmo19g00847 942 Pfam PAS domain 433 524 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00304 Cmo19g00847 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00847 Cmo-Chr19:8226861 Cmo20g00685 Cmo-Chr20:3370425 1.67E-30 dispersed
Cmo19g00847 Cmo-Chr19:8226861 Cmo02g00304 Cmo-Chr2:1529636 4.47E-16 wgd
Cmo19g00847 Cmo-Chr19:8226861 Cmo03g00624 Cmo-Chr3:5785792 2.74E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75110 PF00069 Pkinase 2.50E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00847 K20715 - csv:101213364 1368.21