Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00853 ATGGGTTATATGTGTGATTTCTGTGGGCAACAAAGGTCGTTTGTTTACTGTCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCATTCTGCTAACGCCTTGTCGAGGCGACACTCAAGAACGTTGTTATGTGATCGCTGTCATTCACAAGCAGCATTTGTAAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAACTGTGATTACATGGGGCATAGCTCATCCGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCGGACTGCCCGACAGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTGGATCTCCCTTCTGGAAGCGATGCTTGCGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAACGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTCGATGAAACCAACGAATTCTCAAGTGGGGATAAATCGATTTGGTTCGGGTCCTCTTCAGCGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTACAGGTGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAATTCGACATTGACGATGACCTCTACGAGAGTTTGAATATGGATGAAGATTTGAATATCGAAAACTATGAAGAACTATTTGGTGTATCCCTCAGTTATTCTGAAGAATTGTTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATCAAAAGCTTAGCTGCTGCTAAATCTGGTTGCGCTGGTGCGACTGATGCAAAGGGGCCGTCAGGTTTAGCTAATAATATGATGCAGCCTGCAAGCAGTAATGCAGCATCAGCAGATTCTGTGATGAGTGCGAAGACTGACCCGATTCTTTGTTATAACAATAAGCAAGAGCATTCCAGTCGATCGTTTTCTGGCATGACTGGAGAGAGTAGCGCAGGCGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTGATGGGAGAGCCTCCATGGTGTTCTATGGCTACAGAGAGTTCGTTCCAATCATCGAATCGTAGCGATGCTGTAATGCGCTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTGCGGGCCGATACTCGAAGACGGGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCGATGAGTCAAACCAGAAGCTACTGA 1236 44.9 MGYMCDFCGQQRSFVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSGDKSIWFGSSSAPQYLSKPHIMDQPITTGATSPKLHYPGTKGPEFDIDDDLYESLNMDEDLNIENYEELFGVSLSYSEELLENGGIDSLFRIKSLAAAKSGCAGATDAKGPSGLANNMMQPASSNAASADSVMSAKTDPILCYNNKQEHSSRSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPMSQTRSY 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8279509 8283097 + CmoCh19G008530.1 Cmo19g00853 404013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00853 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Cmo19g00853 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo19g00853 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Cmo19g00853 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Cmo19g00853 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cmo19g00853 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo19g00853 411 CDD Bbox1_BBX-like 5 47 - -
Cmo19g00853 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00244 Cmo19g00853 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00853 Cmo-Chr19:8279509 Cmo20g00608 Cmo-Chr20:2982028 6.20E-64 dispersed
Cmo11g01818 Cmo-Chr11:12734629 Cmo19g00853 Cmo-Chr19:8279509 0 wgd
Cmo19g00853 Cmo-Chr19:8279509 Cmo20g00696 Cmo-Chr20:3448685 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11653 PF06203 CCT 2.70E-16 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00853 - - csv:101216326 738.413