Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00869 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGATGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCGTCGGTTGATGTCAACGTGGCAAGTTCGAGCAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACGCTTTTTCGTTCGCCAGGAGCTGCAGCGTTACAGAAAGCAGCTGATTTTAAGGAAGTTAATCTTCTTAATCCTATACTAATCCATTGTAAAACTTCTGGTAAACCGTTTTATGCGATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGTTAGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCGATCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGGCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGAGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGCTCTATTGCATCTCTCGTGATGTCTATTACGATCAATGAGAGTGATAGCGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACCGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTAGTTGGAGTCACCCCCTCAGAGGCACAAATTAGGAATATAGCTGAATGGCTTCTCGAAGACCATAGCGGAAGTGCAGGTTTAAGTACCGATAGCCTAGTTGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTGTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCCGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGACGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCGCTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAACATCGAAATCAAACTCAAAACGTTTGGAATTTCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTATATTTTATAGGGCAGGATGTTACAAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGCGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGGAGGGTAGAGATGACAAATAGGATTCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTCAAAGACCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACGGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAGAAGGACTGATTCAGAGGGTAAGATCACCGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTAAAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGCCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTAATGGGTTCATCGGAGTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCTGGAACAATTATACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGACGTCGTAATGAATCAAACCACGATTTTGAGCCGAGAGCGCCAGGTGAAGATCATCTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCGTCATCTTCCGAACAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCGGTTCCTGGAATTCCTGCACACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATAATGAATGGCACTGTACAGTATATCCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTCGAGCATATTGCTTAA 3360 42.98 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNVASSSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILIHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFRKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMLSLAVQGIEEKNIEIKLKTFGISGHDGPVILEVNSCCSRDLNNNVVGVYFIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRILLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASRRTDSEGKITGVVFFLHVASSELKYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLMGSSELNEEQKRLLKSNTLSLEQLYKIVHDTDIQSIEECYIETNCREFNLGDVLDVVMNQTTILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVIFRTTPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYIREAETSSFIILIEFPLVEHIA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8367133 8372763 + CmoCh19G008690.1 Cmo19g00869 404029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00869 1119 SUPERFAMILY GAF domain-like 406 583 - -
Cmo19g00869 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 733 IPR035965 -
Cmo19g00869 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cmo19g00869 1119 CDD PAS 625 731 IPR000014 -
Cmo19g00869 1119 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cmo19g00869 1119 Pfam PAS fold 757 868 IPR013767 GO:0006355
Cmo19g00869 1119 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cmo19g00869 1119 CDD HATPase_Phy-like 1001 1112 IPR044767 -
Cmo19g00869 1119 SMART HKATPase_4 1002 1116 IPR003594 -
Cmo19g00869 1119 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cmo19g00869 1119 TIGRFAM sensory_box: PAS domain S-box protein 761 868 IPR000014 -
Cmo19g00869 1119 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00869 1119 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cmo19g00869 1119 Gene3D - 934 1108 IPR036890 -
Cmo19g00869 1119 SMART pas_2 616 682 IPR000014 -
Cmo19g00869 1119 SMART pas_2 746 815 IPR000014 -
Cmo19g00869 1119 Gene3D - 403 576 IPR043150 -
Cmo19g00869 1119 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cmo19g00869 1119 SUPERFAMILY GAF domain-like 199 395 - -
Cmo19g00869 1119 Gene3D PAS domain 601 745 - -
Cmo19g00869 1119 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo19g00869 1119 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1110 IPR036890 -
Cmo19g00869 1119 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1116 - -
Cmo19g00869 1119 Gene3D PAS domain 74 322 - -
Cmo19g00869 1119 ProSiteProfiles Histidine kinase domain profile. 897 1116 IPR005467 -
Cmo19g00869 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cmo19g00869 1119 SMART gaf_1 219 408 IPR003018 GO:0005515
Cmo19g00869 1119 CDD PAS 758 868 IPR000014 -
Cmo19g00869 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cmo19g00869 1119 PANTHER PHYTOCHROME C 1 1116 - -
Cmo19g00869 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Cmo19g00869 1119 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 Gene3D - 200 559 IPR029016 -
Cmo19g00869 1119 Gene3D PAS domain 760 873 - -
Cmo19g00869 1119 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cmo19g00869 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1108 IPR003594 -
Cmo19g00869 1119 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00639 Cmo-Chr12:4071927 Cmo19g00869 Cmo-Chr19:8367133 0 dispersed
Cmo18g00427 Cmo-Chr18:2811865 Cmo19g00869 Cmo-Chr19:8367133 0 dispersed
Cmo19g00869 Cmo-Chr19:8367133 Cmo05g00778 Cmo-Chr5:4456056 2.48E-07 dispersed
Cmo19g00869 Cmo-Chr19:8367133 Cmo05g00967 Cmo-Chr5:7775625 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00869 - - csv:101211915 2021.13