Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00869 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGATGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCGTCGGTTGATGTCAACGTGGCAAGTTCGAGCAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACGCTTTTTCGTTCGCCAGGAGCTGCAGCGTTACAGAAAGCAGCTGATTTTAAGGAAGTTAATCTTCTTAATCCTATACTAATCCATTGTAAAACTTCTGGTAAACCGTTTTATGCGATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGTTAGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCGATCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGGCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGAGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGCTCTATTGCATCTCTCGTGATGTCTATTACGATCAATGAGAGTGATAGCGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACCGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTAGTTGGAGTCACCCCCTCAGAGGCACAAATTAGGAATATAGCTGAATGGCTTCTCGAAGACCATAGCGGAAGTGCAGGTTTAAGTACCGATAGCCTAGTTGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTGTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCCGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGACGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCGCTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTGGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAACATCGAAATCAAACTCAAAACGTTTGGAATTTCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTATATTTTATAGGGCAGGATGTTACAAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGCGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGGAGGGTAGAGATGACAAATAGGATTCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTCAAAGACCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACGGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAGAAGGACTGATTCAGAGGGTAAGATCACCGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTAAAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGCCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTAATGGGTTCATCGGAGTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCTGGAACAATTATACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGACGTCGTAATGAATCAAACCACGATTTTGAGCCGAGAGCGCCAGGTGAAGATCATCTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCGTCATCTTCCGAACAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCGGTTCCTGGAATTCCTGCACACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATAATGAATGGCACTGTACAGTATATCCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTCGAGCATATTGCTTAA 3360 42.98 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNVASSSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILIHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFRKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMLSLAVQGIEEKNIEIKLKTFGISGHDGPVILEVNSCCSRDLNNNVVGVYFIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRILLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASRRTDSEGKITGVVFFLHVASSELKYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLMGSSELNEEQKRLLKSNTLSLEQLYKIVHDTDIQSIEECYIETNCREFNLGDVLDVVMNQTTILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVIFRTTPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYIREAETSSFIILIEFPLVEHIA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8367133 8372763 + CmoCh19G008690.1 Cmo19g00869 404029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00869 1119 SUPERFAMILY GAF domain-like 406 583 - -
Cmo19g00869 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 733 IPR035965 -
Cmo19g00869 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cmo19g00869 1119 CDD PAS 625 731 IPR000014 -
Cmo19g00869 1119 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cmo19g00869 1119 Pfam PAS fold 757 868 IPR013767 GO:0006355
Cmo19g00869 1119 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cmo19g00869 1119 CDD HATPase_Phy-like 1001 1112 IPR044767 -
Cmo19g00869 1119 SMART HKATPase_4 1002 1116 IPR003594 -
Cmo19g00869 1119 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cmo19g00869 1119 TIGRFAM sensory_box: PAS domain S-box protein 761 868 IPR000014 -
Cmo19g00869 1119 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00869 1119 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cmo19g00869 1119 Gene3D - 934 1108 IPR036890 -
Cmo19g00869 1119 SMART pas_2 616 682 IPR000014 -
Cmo19g00869 1119 SMART pas_2 746 815 IPR000014 -
Cmo19g00869 1119 Gene3D - 403 576 IPR043150 -
Cmo19g00869 1119 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cmo19g00869 1119 SUPERFAMILY GAF domain-like 199 395 - -
Cmo19g00869 1119 Gene3D PAS domain 601 745 - -
Cmo19g00869 1119 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo19g00869 1119 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1110 IPR036890 -
Cmo19g00869 1119 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1116 - -
Cmo19g00869 1119 Gene3D PAS domain 74 322 - -
Cmo19g00869 1119 ProSiteProfiles Histidine kinase domain profile. 897 1116 IPR005467 -
Cmo19g00869 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cmo19g00869 1119 SMART gaf_1 219 408 IPR003018 GO:0005515
Cmo19g00869 1119 CDD PAS 758 868 IPR000014 -
Cmo19g00869 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cmo19g00869 1119 PANTHER PHYTOCHROME C 1 1116 - -
Cmo19g00869 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Cmo19g00869 1119 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cmo19g00869 1119 Gene3D - 200 559 IPR029016 -
Cmo19g00869 1119 Gene3D PAS domain 760 873 - -
Cmo19g00869 1119 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cmo19g00869 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1108 IPR003594 -
Cmo19g00869 1119 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00869 - - - csv:101211915 2021.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00639 Cmo-Chr12:4071927 Cmo19g00869 Cmo-Chr19:8367133 0 dispersed
Cmo18g00427 Cmo-Chr18:2811865 Cmo19g00869 Cmo-Chr19:8367133 0 dispersed
Cmo19g00869 Cmo-Chr19:8367133 Cmo05g00778 Cmo-Chr5:4456056 2.48E-07 dispersed
Cmo19g00869 Cmo-Chr19:8367133 Cmo05g00967 Cmo-Chr5:7775625 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g01290 . 31 1193 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1438.7
Cmo06g00111 . 515 1725 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1428.3
Cmo04g00017 . 53 1033 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Cmo04g02235 CST 23 1023 Histidine Kinase Gene Family AT2G01830 69.3 0.0e+00 1304.7
Cmo15g00925 CST 155 1182 Histidine Kinase Gene Family AT2G01830 67.1 0.0e+00 1268.4
Cmo11g01837 . 279 1229 Histidine Kinase Gene Family AT2G01830 53.2 2.1e-273 939.5
Cmo20g00674 . 297 1240 Histidine Kinase Gene Family AT2G01830 53.5 8.1e-273 937.6
Cmo08g00183 . 51 984 Histidine Kinase Gene Family AT2G01830 52.3 1.3e-265 913.7
Cmo02g00226 . 283 1214 Histidine Kinase Gene Family AT2G01830 51.2 8.2e-257 884.4
Cmo17g01385 . 58 980 Histidine Kinase Gene Family AT2G01830 50.7 6.9e-256 881.3
Cmo01g01734 CST 1 999 Histidine Kinase Gene Family AT5G10720 57.1 2.2e-290 995.7
Cmo09g00388 CST 1 996 Histidine Kinase Gene Family AT5G10720 56.5 4.1e-289 991.5
Cmo05g00967 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cmo12g00639 . 23 1087 Histidine Kinase Gene Family AT1G09570 69.9 0.0e+00 1566.2
Cmo19g00869 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1205.7
Cmo14g01619 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1195.6
Cmo06g01560 CST 29 1109 Histidine Kinase Gene Family AT1G09570 52.0 0.0e+00 1137.1
Cmo14g01619 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1670.6
Cmo06g01560 CST 28 1050 Histidine Kinase Gene Family AT2G18790 76.7 0.0e+00 1585.5
Cmo18g00427 . 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1226.1
Cmo13g00596 . 31 1050 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Cmo05g00967 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1086.2
Cmo19g00869 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.1 0.0e+00 1075.8
Cmo19g00869 . 12 1115 Histidine Kinase Gene Family AT5G35840 61.1 0.0e+00 1368.2
Cmo14g01619 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1147.5
Cmo05g00967 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1110.5
Cmo06g01560 CST 29 1111 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1100.5
Cmo14g01619 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.2 0.0e+00 1710.3
Cmo06g01560 CST 32 1111 Histidine Kinase Gene Family AT4G16250 73.4 0.0e+00 1619.8
Cmo18g00427 . 38 1113 Histidine Kinase Gene Family AT4G16250 57.3 0.0e+00 1256.5
Cmo13g00596 . 32 1092 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1245.3
Cmo05g00967 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1131.7
Cmo19g00869 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1107.4
Cmo18g00427 . 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.7
Cmo13g00596 . 15 1092 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1345.1
Cmo14g01619 CST 38 1120 Histidine Kinase Gene Family AT4G18130 59.0 0.0e+00 1275.4
Cmo06g01560 CST 40 1109 Histidine Kinase Gene Family AT4G18130 56.7 0.0e+00 1231.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00869 Cmo_Chr19 FPKM 39.15432 40.636299 38.253387 36.628757 5.07689 5.886948 4.788157 7.964999 7.023768 11.191684