Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00879 ATGGCGATGTTTCAAAGAACCGCCGGTGATGGGGCTGAACCGCTTCTGGTTGGTACAGCATCCAAACTGGTTCGCTTCCGGCAACTAGTTTTAAGCATACGCTTTGTACTCAGCCTGAAGCGAACCAGTTCGCCACCGCCGCCTTCGCCGTCGCCGCCGCCTCAATACACGGTTATTGACGTACATTTTGAAGACGAAAGGGATATCCAGAAGCAGCGTCTTAAGAAGATCGTGAAAGAGAAGAATTTAAAAGCGCTAAAAGACTTCGGCGGTGTAGAGGAGGCTGTCTCGTTTCTGCGTTCGGAATCGCTGCTACAGATCGATGCACAAACACTTCGTGGGTATGGATTCTGTGGCTCATTTCTCCTGTTTGTAAAAGAATTTTGCTGTGATTTATGGAACTCCTTAAATAGCTGGACAATCTTGTTCTTAGTAATTGCTGCTGGTTTGTCTTTTGCCATTGAATCATTAGAACAAGGACTTAAACATGGATGGCATGATGGTTTTGGTATACTCCTTGCAGTGTTCTTACTTGTATTTTTCCCTCCAATCTTAAGCGTTTACCGCAAAAGAGCTGACGAGAAAGAGCTTTTAAAGAATAAGAACATCTTGCAAGTGACTGTTGAAAGAGTTGAACTATGCCAAAGGGTCTCTGTTTCTGATGTTAGGGAGGGAGATATAATCCATTTGAAGAAGGGCGATCGTGTTCCTGCAGATGGGTTGCTTATAAGTGGCAAAAATCTGCTTCTGGATGAAGTAATCAACCCCCACATCGATCCTAATCGAAACCCTTTTCTATTTTGTGGCTCTGTGGTTGAACATGGTGAAGGGAAGATGATTGCGGTGTCTGTTGGCCATGACACAGCCTCTGGGAAAGTGTTGCATGAGCTGGTTACTCATCCTACACAGGAGACGCTGTTCCAATCTAGGATGAACAAGCCATATCAATTCTTGGAGAAGTTTAGTCTTACAGTGTCTTTAACGATTCTTGTTGTAGTTCTAGTCCGTTTGTTATGTAAAAAACATGATGATTACTACAATGATAGGCCTGAAACCAAGGGGAAATTAACGGCAGGCATTGTGGTTCAAGCCTTTGAAAGGATGTTCTTGAAGTTTGGGTCGAGAGCTTCCTTCTTGGCTACTGTTCTGTTAACCATGGTGATAGGATTACAGCATGGGATGCCATTTGCAATCACTCTGTCCCTCTCTTTCTGGAGAGAAAAGATGAGATCCCTCAAAGGAAACTGTCTGAATCTATCAGCTTGTGGAACTTTGGGCCTTGTTTCTGCTATCTGTATTGATATCACTGCTGAGTTATCATTTCACGAGGTGGAGCTCTGTGAGTTCTTTGTTGCAGAACAAAAGATCAACTCTGATATGGAGTTTCATACTGATATTTCTCAAAGCCTTGAGCTAGCAGCTCAAATTTTATATTCTGATCCCAAGGTTTCTGTTCATTTAGGGAATGATCTGGTCCATTTCTTGAAAAACAAATTGGGAGCTCCTGATCAGAAGTTTGACATTATTGATCATAAGTTCTTGAGCTCAGAAAAGGGCATTGGAGCATTGGTGAGCAAACGTAGTGAAATGGATACAGAAGCGAACCTTTTTCATGTGCATTATTATGGGGATGCATCAAGTATTGTGAGTATGTGCTCACAATACTATGATATCAGAGGCATAGTTCACGACATAGAAAACGAAAAAGACGTATTCGAAAACGTGATTCGAGAGATGAAACAAAGAGGTTTAAGACCCATTGCATTTGCTTGTAAACAACGAAGGAATGATGATCAGTTGTTTGAAGGAGAATCAAAGCTGCTTGGATTTATAGGTCTAAAATTCTCACATGAAAAAACACTAAATGCCTTAAGGGATCTCCAAAACATTGGTGCAAGAATCATACTAATATCAGAAGATGAGCTTTTTGAGGCCATAAACATGGTTAATGGTCTTGGAACTCAGTGTGACCTCAAGAACAACGTGGTTGAAGGTGAAAGATTTAAGGAAATAATGATGACTGATGGAACTGAGAGACATGAGCTGATGAAGAACATCAGTTTTATGGGAAAGGCAACCTCAGAAGACAAGCATCTGTTAATAAAAGAACTGAAAGCTGAGGGGAACATTGTTGCTTTCTCGCCTGATTTGACATCAAGGGATGTTCCAACTTTGATGGAAGCTGATATTCGGATTCTCCAAGAACATAGGAGCAGTAAAGAATCTAGAATGGTTGGTGATATCATGTGTGAAGATGTGACATCCTTGAACCAGACACTAAAATCTAGCAGGTGCATTTATCTCAACATTCAAAAGTTCTATCAAATTCAGCTCATTGCTTCAGTGTCTGGGCTTGTGATAACCTTGGTCTGCACCATGGTCTCTGGGAAGTCTCCCATAGCCACATTACAGCTTATATGGGTGACTTTGATTATGTGCCTTCTTGGAGGCTTGATGATGGTAATGGAGCTGAATGATGAGGAAGTGCAAGCCCCTCTTCAAGGGAGGGATAGGAATCAATCTCTCATAACTAAACTCATTCTGTACAAGATTGTAATCCATGTCCTATGTCAAGTGTTTGTTTTCTTGCTATTTGAGTACTTGGGACGGGAGATTATGCCCCACATGGAGGAGAATGTGAGGCATACCATGATATTCAATACCTTTGTGCTCTGCCAGATTGCTAATTTGCTTGCTGCTATGGGACTGGTGACGAATAGCGGAGCTTTTTTTAAGGCTGTGTTGCAGAGCCCGTGGTTTATTTTTTTTTTGGCGAGTGTGTTGGCTGTGCAGATGGTGGTGATTGAGTTTGCTAGTGGTGTTGTCAATGGTGTCAAGCTAAGCGCAGTGCAGTGGTATGGGGCAGATCGCCCGAAATACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTATGGATGGGACACAGCCGGTCTGTCAGCCGATCCCGAAACTTTCGCGAAGAACCGTGAGCTTGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCATTAGGTTGTGTCTTCCCTGAAATCCTTGCAAAGAATGGTGTCAAGTTTGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGATTACCTCGGCAACCCAAACCTCATCCATGCTCAGAGTATCCTTGCAATCTGGGCTTGCCAGGTTGTGCTGATGGGCTTTGTTGAAGGATACCGGGTTGGTGGCGGTCCCCTTGGTGAAGGACTAGACCCAATTTACCCAGGAGGCGCCTTCGACCCGCTCGGATTGGCAGATGATCCAGATGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCAATGTTCTCCATGTTCGGATTCTTTGTCCAGGCTATTGTCACCGGAAAGGGTCCTGTTGAGAATCTCTTTGACCATGTTGCAGATCCTGTTGCCAACAATGCATGGGCTTACGCCACCAACTTCGTCCCCGGAAAATGA 3507 43.77 MAMFQRTAGDGAEPLLVGTASKLVRFRQLVLSIRFVLSLKRTSSPPPPSPSPPPQYTVIDVHFEDERDIQKQRLKKIVKEKNLKALKDFGGVEEAVSFLRSESLLQIDAQTLRGYGFCGSFLLFVKEFCCDLWNSLNSWTILFLVIAAGLSFAIESLEQGLKHGWHDGFGILLAVFLLVFFPPILSVYRKRADEKELLKNKNILQVTVERVELCQRVSVSDVREGDIIHLKKGDRVPADGLLISGKNLLLDEVINPHIDPNRNPFLFCGSVVEHGEGKMIAVSVGHDTASGKVLHELVTHPTQETLFQSRMNKPYQFLEKFSLTVSLTILVVVLVRLLCKKHDDYYNDRPETKGKLTAGIVVQAFERMFLKFGSRASFLATVLLTMVIGLQHGMPFAITLSLSFWREKMRSLKGNCLNLSACGTLGLVSAICIDITAELSFHEVELCEFFVAEQKINSDMEFHTDISQSLELAAQILYSDPKVSVHLGNDLVHFLKNKLGAPDQKFDIIDHKFLSSEKGIGALVSKRSEMDTEANLFHVHYYGDASSIVSMCSQYYDIRGIVHDIENEKDVFENVIREMKQRGLRPIAFACKQRRNDDQLFEGESKLLGFIGLKFSHEKTLNALRDLQNIGARIILISEDELFEAINMVNGLGTQCDLKNNVVEGERFKEIMMTDGTERHELMKNISFMGKATSEDKHLLIKELKAEGNIVAFSPDLTSRDVPTLMEADIRILQEHRSSKESRMVGDIMCEDVTSLNQTLKSSRCIYLNIQKFYQIQLIASVSGLVITLVCTMVSGKSPIATLQLIWVTLIMCLLGGLMMVMELNDEEVQAPLQGRDRNQSLITKLILYKIVIHVLCQVFVFLLFEYLGREIMPHMEENVRHTMIFNTFVLCQIANLLAAMGLVTNSGAFFKAVLQSPWFIFFLASVLAVQMVVIEFASGVVNGVKLSAVQWYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHVADPVANNAWAYATNFVPGK 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8410679 8416469 + CmoCh19G008790.1 Cmo19g00879 404039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00879 1168 SUPERFAMILY Chlorophyll a-b binding protein 952 1165 - -
Cmo19g00879 1168 Gene3D - 132 438 - -
Cmo19g00879 1168 Pfam E1-E2 ATPase 207 403 - -
Cmo19g00879 1168 SUPERFAMILY Calcium ATPase, transduction domain A 206 295 IPR008250 -
Cmo19g00879 1168 Pfam Cation transporting ATPase, C-terminus 798 953 IPR006068 -
Cmo19g00879 1168 Gene3D - 467 610 IPR023299 GO:0000166
Cmo19g00879 1168 Gene3D - 751 955 - -
Cmo19g00879 1168 PANTHER CATION-TRANSPORTING ATPASE PLANT 51 953 - -
Cmo19g00879 1168 SUPERFAMILY Calcium ATPase, transmembrane domain M 130 953 IPR023298 -
Cmo19g00879 1168 Gene3D Chlorophyll a/b binding protein domain 959 1161 - -
Cmo19g00879 1168 Coils Coil 562 582 - -
Cmo19g00879 1168 PANTHER CATION TRANSPORTING ATPASE 51 953 - -
Cmo19g00879 1168 Gene3D - 611 750 IPR023214 -
Cmo19g00879 1168 Pfam Chlorophyll A-B binding protein 969 1134 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00879 Cmo-Chr19:8410679 Cmo20g00287 Cmo-Chr20:1389168 1.12E-139 dispersed
Cmo11g01832 Cmo-Chr11:12801551 Cmo19g00879 Cmo-Chr19:8410679 3.75E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00879 - - csv:101210934 1040.8