Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00926 ATGGCACAGCTACCGCCGAAGATCCCAAATATGGCGACCAATTGGCCGGAATTTTCCCGTCAGAAAATCCCTTCAATTGGAAACTTTGCACCGACAACCACAACGGCGGTGGCGTTTACTCACCAGAACCCTTCTTGGGTCGACGAGTTTCTCGATTTTTCTTCCGCTAGACGTGGGTCTCACCGGCGCTCCGTTAGTGATTCCATCACATTCCTTGAAATGCCAATGCTGGAGGAAGATTGCCGAGGCTCCACTGCGCCGCCACCGCCGCCGGGATCTGGCTCCGGCGACAGGAATGAATTTGATGGATTCGAAGACGAGCAATTCCTATCGATGTTTAACGACGAAATCTCTGCTGGCGTGGCGCCCACCGTGTCGTCGTCGAACCCCTCCACGCCGTCTGATCACAACAGCATTAACGACGAGAAAGATGCCCAAAACGACGGCAAGCAAAATCAGAACAAAAACGAAACCGACGAAGTACAGAGCCAACAGCAATCGGATACTCAAACACACTCCAATTCCACGGCGACGGCGACTTCCACCGAACGAATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCTCAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTCGAAAGAAGCGTTACATCGCTACAGGCTGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCACTAAAAAGAGAGATAGAGAGACTGAGGCAAGTATATCACCAGCAAAACATGAAGAAGACGGAAAATGCAGCGCCACACATCACTGCCAGCGTCGCCGTCACGGCGACCACTGCGACGGACGGCAAGCTTTGTAATGTAGGTCAAAAAGAGCAAGCTCCAAACGTGGTCGTTTAG 984 51.02 MAQLPPKIPNMATNWPEFSRQKIPSIGNFAPTTTTAVAFTHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRGSTAPPPPPGSGSGDRNEFDGFEDEQFLSMFNDEISAGVAPTVSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNETDEVQSQQQSDTQTHSNSTATATSTERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNMKKTENAAPHITASVAVTATTATDGKLCNVGQKEQAPNVVV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8586158 8588669 + CmoCh19G009260.1 Cmo19g00926 404086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00926 327 MobiDBLite consensus disorder prediction 156 184 - -
Cmo19g00926 327 SUPERFAMILY Leucine zipper domain 189 243 IPR046347 GO:0003700|GO:0006355
Cmo19g00926 327 MobiDBLite consensus disorder prediction 121 136 - -
Cmo19g00926 327 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 295 - -
Cmo19g00926 327 CDD bZIP_plant_RF2 190 240 IPR044759 GO:0003700|GO:0006355
Cmo19g00926 327 Coils Coil 268 288 - -
Cmo19g00926 327 SMART brlzneu 185 249 IPR004827 GO:0003700|GO:0006355
Cmo19g00926 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 239 IPR004827 GO:0003700|GO:0006355
Cmo19g00926 327 MobiDBLite consensus disorder prediction 80 102 - -
Cmo19g00926 327 Coils Coil 140 160 - -
Cmo19g00926 327 MobiDBLite consensus disorder prediction 137 155 - -
Cmo19g00926 327 MobiDBLite consensus disorder prediction 121 191 - -
Cmo19g00926 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Cmo19g00926 327 PANTHER BASIC LEUCINE ZIPPER 34 1 295 - -
Cmo19g00926 327 Pfam bZIP transcription factor 189 233 IPR004827 GO:0003700|GO:0006355
Cmo19g00926 327 Gene3D - 188 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo19g00926 Cmo20g00648 CCT
Cmo19g00926 Cmo20g00648 ECH
Cmo11g01879 Cmo19g00926 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01286 Cmo-Chr1:10240838 Cmo19g00926 Cmo-Chr19:8586158 3.99E-109 dispersed
Cmo02g00739 Cmo-Chr2:4638948 Cmo19g00926 Cmo-Chr19:8586158 4.53E-20 dispersed
Cmo09g00825 Cmo-Chr9:4250825 Cmo19g00926 Cmo-Chr19:8586158 1.27E-113 dispersed
Cmo19g00926 Cmo-Chr19:8586158 Cmo16g00423 Cmo-Chr16:1976093 2.15E-23 dispersed
Cmo11g01879 Cmo-Chr11:13083836 Cmo19g00926 Cmo-Chr19:8586158 6.04E-158 wgd
Cmo19g00926 Cmo-Chr19:8586158 Cmo20g00648 Cmo-Chr20:3173495 4.43E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11658 PF07716 bZIP_2 3.50E-09 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00926 - - csv:101205276 498.049