Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00938 | ATGTTAAATCAAGTGACGTCCAATTACCAAGCGCTACAGATGCACCTTGCAACCCTAATTCAAACCCAGAAGGCGGCCGACGTTGCCGATCAGATTGAGGAAAAGTCCGCCTCCGCCCAAGAAAAGGTCAGACACGGCGGCGGATGTAATACTAATAAGCTGGTCCCAAGGCAATTTATGGATCTTGGATTGGCCACGAATGCCGACACCGATGATCTCTCGATGTCATCCGACGGAAGGAGTGGAGAGCTGTCGCGATCTCCGGTTACAACTGGAGAAGTCGCGTCGTCCAAACGACATAGCCCCGACCAAGCCTCGAATTGGAGTTCCAATAATAATAATAAGGTTCCCAAATTAGGTTCTTCTTCTTCCTCTTCTTCGGCTAAAGATGCAGATCAAACTGAATCTACTATGAGAAAGGCTCGGGTCTCGGTTCGAGCTAGATCCGAAGCTCCCATGATCACAGACGGATGTCAATGGAGAAAATACGGGCAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTACTACCGGTGCACCATGGCGGCCGGTTGCCCGGTTAGAAAACAAGTTCAAAGATGTGCGGAGGACAAAACAATTTTGATAACAACGTACGAAGGAAACCACAACCATCCATTACCACCGGCGGCCATGGCAATGGCTTCAACAACATCATCGGCGGCTAGGATGCTTCTATCAGGGTCCATGTCAAGTGCCGATGGGTTAATGAATCCAAACTTTTTAGCAAGAACCCTATTGCCATGCTCTTCAAGCATGGCTACAATCTCAGCCTCGGCTCCATTTCCCACCGTGACATTGGACCTAACACAAACCCCAAACCCTTTATTCCAACGCCCGGCTGCCGGCCACTTCCCAATTTCGTTTGCAGCCACTCCGCCTCAGAGCTTCCCCCAGATCTTCGGACATGCATTGTACAACCAATCGAAATTCTCCGGCCTCCAAATGTCGAAGGACATGGAAGCGCCGCCTCCACCTCCGGCGTTGCAGAATCCATTGGCCGATACGTTGAGTGCGGCGAGTGCGGCGATTGCCTCCGACCCGAATTTTATTGCAGCGTTGGCGACGGCGATGACGTCGTTGATCGGAGGATCTCATCATCAAAAGGAGAATGGGAATGGGAATAGTAATGTTGATAACAATACAACTAGCAATTCCCAACAGTAA | 1188 | 50.25 | MLNQVTSNYQALQMHLATLIQTQKAADVADQIEEKSASAQEKVRHGGGCNTNKLVPRQFMDLGLATNADTDDLSMSSDGRSGELSRSPVTTGEVASSKRHSPDQASNWSSNNNNKVPKLGSSSSSSSAKDADQTESTMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAAGHFPISFAATPPQSFPQIFGHALYNQSKFSGLQMSKDMEAPPPPPALQNPLADTLSAASAAIASDPNFIAALATAMTSLIGGSHHQKENGNGNSNVDNNTTSNSQQ | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8631530 | 8633069 | + | CmoCh19G009380.1 | Cmo19g00938 | 404098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00938 | 395 | MobiDBLite | consensus disorder prediction | 371 | 395 | - | - | |
Cmo19g00938 | 395 | PANTHER | OS05G0567200 PROTEIN | 1 | 392 | - | - | |
Cmo19g00938 | 395 | MobiDBLite | consensus disorder prediction | 68 | 149 | - | - | |
Cmo19g00938 | 395 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 1 | 392 | IPR044810 | GO:0003700 | |
Cmo19g00938 | 395 | Gene3D | WRKY domain | 139 | 216 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g00938 | 395 | ProSiteProfiles | WRKY domain profile. | 149 | 215 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g00938 | 395 | SUPERFAMILY | WRKY DNA-binding domain | 147 | 215 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g00938 | 395 | MobiDBLite | consensus disorder prediction | 69 | 132 | - | - | |
Cmo19g00938 | 395 | Pfam | WRKY DNA -binding domain | 156 | 213 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g00938 | 395 | SMART | WRKY_cls | 154 | 214 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01889 | Cmo19g00938 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00149 | Cmo-Chr11:752417 | Cmo19g00938 | Cmo-Chr19:8631530 | 1.56E-20 | dispersed | |
Cmo13g00963 | Cmo-Chr13:8331688 | Cmo19g00938 | Cmo-Chr19:8631530 | 5.91E-55 | dispersed | |
Cmo16g00393 | Cmo-Chr16:1816509 | Cmo19g00938 | Cmo-Chr19:8631530 | 5.57E-49 | dispersed | |
Cmo19g00938 | Cmo-Chr19:8631530 | Cmo13g00017 | Cmo-Chr13:167081 | 5.66E-14 | dispersed | |
Cmo11g01889 | Cmo-Chr11:13133736 | Cmo19g00938 | Cmo-Chr19:8631530 | 0 | wgd | |
Cmo19g00938 | Cmo-Chr19:8631530 | Cmo03g00573 | Cmo-Chr3:5582475 | 4.05E-122 | wgd | |
Cmo19g00938 | Cmo-Chr19:8631530 | Cmo07g00311 | Cmo-Chr7:1500016 | 8.95E-118 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11660 | PF03106 | WRKY | 1.60E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00938 | - | - | cpep:111811775 | 695.271 |