Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00938 ATGTTAAATCAAGTGACGTCCAATTACCAAGCGCTACAGATGCACCTTGCAACCCTAATTCAAACCCAGAAGGCGGCCGACGTTGCCGATCAGATTGAGGAAAAGTCCGCCTCCGCCCAAGAAAAGGTCAGACACGGCGGCGGATGTAATACTAATAAGCTGGTCCCAAGGCAATTTATGGATCTTGGATTGGCCACGAATGCCGACACCGATGATCTCTCGATGTCATCCGACGGAAGGAGTGGAGAGCTGTCGCGATCTCCGGTTACAACTGGAGAAGTCGCGTCGTCCAAACGACATAGCCCCGACCAAGCCTCGAATTGGAGTTCCAATAATAATAATAAGGTTCCCAAATTAGGTTCTTCTTCTTCCTCTTCTTCGGCTAAAGATGCAGATCAAACTGAATCTACTATGAGAAAGGCTCGGGTCTCGGTTCGAGCTAGATCCGAAGCTCCCATGATCACAGACGGATGTCAATGGAGAAAATACGGGCAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTACTACCGGTGCACCATGGCGGCCGGTTGCCCGGTTAGAAAACAAGTTCAAAGATGTGCGGAGGACAAAACAATTTTGATAACAACGTACGAAGGAAACCACAACCATCCATTACCACCGGCGGCCATGGCAATGGCTTCAACAACATCATCGGCGGCTAGGATGCTTCTATCAGGGTCCATGTCAAGTGCCGATGGGTTAATGAATCCAAACTTTTTAGCAAGAACCCTATTGCCATGCTCTTCAAGCATGGCTACAATCTCAGCCTCGGCTCCATTTCCCACCGTGACATTGGACCTAACACAAACCCCAAACCCTTTATTCCAACGCCCGGCTGCCGGCCACTTCCCAATTTCGTTTGCAGCCACTCCGCCTCAGAGCTTCCCCCAGATCTTCGGACATGCATTGTACAACCAATCGAAATTCTCCGGCCTCCAAATGTCGAAGGACATGGAAGCGCCGCCTCCACCTCCGGCGTTGCAGAATCCATTGGCCGATACGTTGAGTGCGGCGAGTGCGGCGATTGCCTCCGACCCGAATTTTATTGCAGCGTTGGCGACGGCGATGACGTCGTTGATCGGAGGATCTCATCATCAAAAGGAGAATGGGAATGGGAATAGTAATGTTGATAACAATACAACTAGCAATTCCCAACAGTAA 1188 50.25 MLNQVTSNYQALQMHLATLIQTQKAADVADQIEEKSASAQEKVRHGGGCNTNKLVPRQFMDLGLATNADTDDLSMSSDGRSGELSRSPVTTGEVASSKRHSPDQASNWSSNNNNKVPKLGSSSSSSSAKDADQTESTMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAAGHFPISFAATPPQSFPQIFGHALYNQSKFSGLQMSKDMEAPPPPPALQNPLADTLSAASAAIASDPNFIAALATAMTSLIGGSHHQKENGNGNSNVDNNTTSNSQQ 395
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 8631530 8633069 + CmoCh19G009380.1 Cmo19g00938 404098
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00938 395 MobiDBLite consensus disorder prediction 371 395 - -
Cmo19g00938 395 PANTHER OS05G0567200 PROTEIN 1 392 - -
Cmo19g00938 395 MobiDBLite consensus disorder prediction 68 149 - -
Cmo19g00938 395 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 392 IPR044810 GO:0003700
Cmo19g00938 395 Gene3D WRKY domain 139 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo19g00938 395 ProSiteProfiles WRKY domain profile. 149 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g00938 395 SUPERFAMILY WRKY DNA-binding domain 147 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo19g00938 395 MobiDBLite consensus disorder prediction 69 132 - -
Cmo19g00938 395 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g00938 395 SMART WRKY_cls 154 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo11g01889 Cmo19g00938 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00149 Cmo-Chr11:752417 Cmo19g00938 Cmo-Chr19:8631530 1.56E-20 dispersed
Cmo13g00963 Cmo-Chr13:8331688 Cmo19g00938 Cmo-Chr19:8631530 5.91E-55 dispersed
Cmo16g00393 Cmo-Chr16:1816509 Cmo19g00938 Cmo-Chr19:8631530 5.57E-49 dispersed
Cmo19g00938 Cmo-Chr19:8631530 Cmo13g00017 Cmo-Chr13:167081 5.66E-14 dispersed
Cmo11g01889 Cmo-Chr11:13133736 Cmo19g00938 Cmo-Chr19:8631530 0 wgd
Cmo19g00938 Cmo-Chr19:8631530 Cmo03g00573 Cmo-Chr3:5582475 4.05E-122 wgd
Cmo19g00938 Cmo-Chr19:8631530 Cmo07g00311 Cmo-Chr7:1500016 8.95E-118 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11660 PF03106 WRKY 1.60E-24 CL0274 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00938 - - cpep:111811775 695.271