Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00939 ATGGCCTGGACCCGACTAGCTGCCGTCGGCCACGGCTCCTTCGCCACCGTCTACCTCGCTGCTTCCTCATCTTCCGGCGACCTCTTCGCTGTCAAGTCCGCCGAGCTTCTCAATTCGGACTTTCTTGAAACAGAGCAGAGGATTCTTTCTTCGCTGTCCCACCCTTCAATTGTGGGCTACAAGGGATTCGACGTAACGACAGAAAATGGGAAGCTTATGTATAATCTCTTCATGGAGTACGCCGCTGGTGGCTCTCTCGCCGACGAAATCGTTCGGCGTGGCGGCCGGATTAAGGAGGTGACAGCGGCGTTTTACACGCGTCAAATTGTCAGAGGATTGGAGTACTTGCACAAGCGGGGTTTGGTGCATTGTGATGTCAAAGCTAGGAACATTTTAATTGGTGCAGATGGTTTGAAGATCGCTGATTTCGGATGCTCCAAATGGGTTCGTGAGTCGCCGGCAGCGGTCTGCGGAACGCCGATGTTTATGGCACCAGAGGTGGCGCGTGGGGAAACACAGGGGATTTCCTCTGACATATGGGCACTCGGGTGTACTTTAATCGAAATGGTGTCCGGCGCCCCGCCGTGGCCTACCGCCGGAGACCCAGTTTCGACGCTGTACCGGATCGCATATTCCGGCGACTCACCGGAAATTCCGAGCTTTTTATCGGAGAAAGCGAAGGATTTTTTAGGGAAATGCTTGAGAAGAAACCCGACAGAACGGTGGAGTGCGAATCGACTTCTTAAACATCCATTTTTGGGGGAACTGAGTTTTGGGTTCGAGATAATCAGGGAATTACATTCAGATTTCGAATCTCCGACGAGTATTTTGGATCAAGGCCCTTGGAACTCGTTAGAAGAAGGGTCGCAAACTCTGTTGAAAACAGAGACATGGGAGGACGACAGAATCAAACGGCTGTCGATGTTTTCAGGGGAAATCAAATGGGAAATGAGAGATGATAATTGGATCACAATCCGAAGCTGTGTTAATGATGATAATTGA 1002 50.8 MAWTRLAAVGHGSFATVYLAASSSSGDLFAVKSAELLNSDFLETEQRILSSLSHPSIVGYKGFDVTTENGKLMYNLFMEYAAGGSLADEIVRRGGRIKEVTAAFYTRQIVRGLEYLHKRGLVHCDVKARNILIGADGLKIADFGCSKWVRESPAAVCGTPMFMAPEVARGETQGISSDIWALGCTLIEMVSGAPPWPTAGDPVSTLYRIAYSGDSPEIPSFLSEKAKDFLGKCLRRNPTERWSANRLLKHPFLGELSFGFEIIRELHSDFESPTSILDQGPWNSLEEGSQTLLKTETWEDDRIKRLSMFSGEIKWEMRDDNWITIRSCVNDDN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8635652 8636653 + CmoCh19G009390.1 Cmo19g00939 404099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00939 333 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00939 333 CDD STKc_MAPKKK 3 253 - -
Cmo19g00939 333 PANTHER MAP KINASE KINASE KINASE 1 328 - -
Cmo19g00939 333 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00939 333 SUPERFAMILY Protein kinase-like (PK-like) 4 284 IPR011009 -
Cmo19g00939 333 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cmo19g00939 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cmo19g00939 333 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cmo19g00939 333 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 328 - -
Cmo19g00939 333 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00180 Cmo19g00939 CCT
Cmo02g00180 Cmo19g00939 ECH
Cmo11g01890 Cmo19g00939 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00939 Cmo-Chr19:8635652 Cmo20g01005 Cmo-Chr20:6127972 2.34E-59 dispersed
Cmo17g01223 Cmo-Chr17:9736266 Cmo19g00939 Cmo-Chr19:8635652 6.42E-13 transposed
Cmo01g01167 Cmo-Chr1:9545207 Cmo19g00939 Cmo-Chr19:8635652 1.70E-99 wgd
Cmo11g01890 Cmo-Chr11:13141047 Cmo19g00939 Cmo-Chr19:8635652 0 wgd
Cmo19g00939 Cmo-Chr19:8635652 Cmo02g00180 Cmo-Chr2:852639 3.40E-121 wgd
Cmo19g00939 Cmo-Chr19:8635652 Cmo03g00571 Cmo-Chr3:5572843 8.64E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75111 PF00069 Pkinase 1.10E-58 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00939 K20716 - csv:101205351 533.487