Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00954 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGCCGATGATCGGAAGGAATGGAAGTGTTGGGATTTTTGGGTCTCCGGCGAGTCTTCTTCTTGGTCAGGGGAGTATAATGGAGGGAGGAGGGCAGGTAGAGGGAGTGGAGTTTTCAGAGAGCGATTTTGGGAGGATGAGAGAAGGAGAGGAGTTTGAGAGTGCAACAAAATCAAGCAGCGAGAACCAGGAGGTGGGTTCTGGTGATGACCTTGACCATCAACGACCCAAAAAGAAGCGTTACCACCGCCATACTCAGAACCAGATCCAACAAATGGAGGCGTTCTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGAAGGAGCTGAGTAGGGAGTTGGGTTTGGAGCCGTTGCAAGTCAAGTTTTGGTTCCAAAACAAGAGAACTCAGATGAAGACCCATCATGAGCGACATGAGAACACCCAGCTTCGAACAGAAAATGAGAAGCTTCGAGCTGATAATATGAGGTACAGAGAAGCCCTCGGTAATGCTACGTGTCCTAATTGTGGAGGCCCCACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAACGCCCGCTTGAGAGAAGAGATCGATCGCATCTCAGCCATAGCAGCAAAATACGTAGGAAAACCAGTATCGAGCTACCCGCTTCTTTCCACACCAATGGCATCAAGTCCTCTAGAACTTGGAATTGGAAGCTATGGCGGCCACAATTCAGGCCTCGGAGCTGGTGGTGGGGACATGTACGGGGCGGTGGACCTTCTGAGGACTATAAGCGCGCCATCGGAGGCTGACAAGCCCATAATCATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTTCGAATGGCTCAGATGGGTGAGCCCTTGTGGATGACTGCACTCGATGGCTCCACGGCTGTACTTAACGAAGATGAATACGTTAGAACCTTCCCTAGAGGAATTGGACCTAAGCCCTCTGGGTTTAGCTGTGAAGCTTCTCGTGCCACTGCTGTTGTCATTATGAACCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAGTGGTCAACCGTATTCAGTGGGATTGTGTCAAGAGCTATGACATTAGAAGTTTTGTCAACCGGCGTTGCCGGAAACTACAACGGAGCATTACAAGTGATGACATCGGAATTGCAAGTGCCTTCGCCACTCGTTCCGACTCGGGAGAGCTATTTCGTTCGGTACTGTAAACAGCACGGCGAGGGAACTTGGGCTGTGGTCGACGTTTCCTTGGACAATTTACGCCCGACTCCGGCGCTTAGATGCAGGAGAAGGCCATCCGGTTGTTTAATCCAAGACATGCCCAATGGATATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGCGGGGTGCACAGTTTGTACAACCAGCTGGTTAGGTCTGGCCATGCGTTCGGCGCTAAGCGTTGGATTGCGACGTTGGATCGTCAGTGTGAAAGGTTGGCCAGCGCTATGGCTACAAGTATTCCTACCGGTGATGCTGGTGTGATAACCAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTAGCAGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCCACCACACACACATGGACAACTCTGTCGGGAACTGGAGCGGATGATGTTCGAGTTATGACTAGAAAGAGTATTGACGATCCCGGCAGACCACCTGGCATTGTCCTCAGCGCCGCCACTTCATTTTGGCTTCCTGTTCCTCCCAAAAGAGTGTTTGATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCGAACGGTGGAATTGTGCAAGAAATGGCTCACATTGCCAACGGCCGCGACACGGGAAACTGTGTTTCATTGCTACGAGTAAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGCAGCACAGATGAAACAGCGTCGTTTGTGGTGTATGCGCCGGTGGACATTGTGGCCATCAACGTGGTGCTAAACGGTGGAGATCCCGATTATGTCGCGCTTCTCCCGTCTGGATTTGCCATTCTTCCCGACGGAAGCACCACGTCGGACGGCGGCGCTAATGGCGTGGCGGAACATGGGTCCGGCGGGTCGCTTTTAACAGTTGCATTTCAGATTTTGGTGGACTCGGTTCCGACAGCTAAACTTTCTCTTGGGTCAGTCGCAACAGTCAACAATCTGATTGCCTGTACCGTTGAGAGGATCAAAGCCTCTTTGTCATGCGAGAATCAAGAGGGAATAAGTCAAGAACGCACCTCGAAGAAGAAGAAGAAGGATGGAGATTTAATGGTGGGGGTTCGGGTATTGACTTTGTCCATTATCATTATTGTTTGTGTAGCTAAGCTTGTGGGCATTATTTTAGGGTTCTTAAGAGTTGAACTTGTTTATAGCATAATCCTGTGGTGTCTTTGTTTCAATTCTCTTTTCAATGTGTTCATTATTATTAGACAAAGGGTACCCATGCCCTATTGCCTATAA 2541 49.39 MPAGMMIPARNTAPMIGRNGSVGIFGSPASLLLGQGSIMEGGGQVEGVEFSESDFGRMREGEEFESATKSSSENQEVGSGDDLDHQRPKKKRYHRHTQNQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALGNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSSYPLLSTPMASSPLELGIGSYGGHNSGLGAGGGDMYGAVDLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTALDGSTAVLNEDEYVRTFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPTPALRCRRRPSGCLIQDMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGIVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDETASFVVYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGSTTSDGGANGVAEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENQEGISQERTSKKKKKDGDLMVGVRVLTLSIIIIVCVAKLVGIILGFLRVELVYSIILWCLCFNSLFNVFIIIRQRVPMPYCL 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8710347 8714953 + CmoCh19G009540.1 Cmo19g00954 404114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00954 846 SUPERFAMILY Bet v1-like 522 757 - -
Cmo19g00954 846 SMART HOX_1 88 151 IPR001356 GO:0003677
Cmo19g00954 846 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Cmo19g00954 846 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Cmo19g00954 846 SUPERFAMILY Bet v1-like 276 505 - -
Cmo19g00954 846 SUPERFAMILY Homeodomain-like 77 146 IPR009057 -
Cmo19g00954 846 SMART START_1 283 503 IPR002913 GO:0008289
Cmo19g00954 846 CDD homeodomain 90 148 IPR001356 GO:0003677
Cmo19g00954 846 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289
Cmo19g00954 846 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 54 762 - -
Cmo19g00954 846 MobiDBLite consensus disorder prediction 52 69 - -
Cmo19g00954 846 MobiDBLite consensus disorder prediction 51 98 - -
Cmo19g00954 846 CDD START_ArGLABRA2_like 278 502 - -
Cmo19g00954 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 762 IPR042160 -
Cmo19g00954 846 Coils Coil 153 173 - -
Cmo19g00954 846 Pfam START domain 284 503 IPR002913 GO:0008289
Cmo19g00954 846 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Cmo19g00954 846 Gene3D - 76 164 - -
Cmo19g00954 846 Gene3D - 314 500 IPR023393 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00167 Cmo19g00954 CCT
Cmo19g00954 Cmo20g00616 CCT
Cmo19g00954 Cmo20g00616 ECH
Cmo02g00167 Cmo19g00954 ECH
Cmo11g01907 Cmo19g00954 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01197 Cmo-Chr1:9700078 Cmo19g00954 Cmo-Chr19:8710347 3.08E-126 dispersed
Cmo08g00893 Cmo-Chr8:5801325 Cmo19g00954 Cmo-Chr19:8710347 0 dispersed
Cmo18g01257 Cmo-Chr18:12311482 Cmo19g00954 Cmo-Chr19:8710347 0 dispersed
Cmo19g00233 Cmo-Chr19:1625115 Cmo19g00954 Cmo-Chr19:8710347 0 dispersed
Cmo11g01907 Cmo-Chr11:13249775 Cmo19g00954 Cmo-Chr19:8710347 0 wgd
Cmo13g00750 Cmo-Chr13:7339496 Cmo19g00954 Cmo-Chr19:8710347 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo02g00167 Cmo-Chr2:799348 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo20g00616 Cmo-Chr20:3019339 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo19g00954 Cmo-Chr19:8710347 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11662 PF01852 START 9.50E-59 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00954 K09338 - csv:101219415 1362.05