Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00955 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCGGGAGCCGGGGGAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACTACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTTTAA 342 42.98 MSEFNVQIPSAFDPFADANAEDSGAGGKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8717832 8719419 - CmoCh19G009550.1 Cmo19g00955 404115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00955 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Cmo19g00955 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Cmo19g00955 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Cmo19g00955 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Cmo19g00955 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Cmo19g00955 113 Gene3D - 1 113 - -
Cmo19g00955 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Cmo19g00955 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
Cmo19g00955 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00955 Cmo-Chr19:8717832 Cmo19g00956 Cmo-Chr19:8721835 1.58E-80 tandem
Cmo01g01180 Cmo-Chr1:9608583 Cmo19g00955 Cmo-Chr19:8717832 4.25E-62 wgd
Cmo11g01909 Cmo-Chr11:13260102 Cmo19g00955 Cmo-Chr19:8717832 6.30E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00955 K03113 - csv:101219651 226.868