Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00979 ATGGATGAAGGAAATAGAGGAGAGGGAACATGTTTATTGCATAGCAGAAGTAGTGAATTGGTGGCCAAAAGAAGAAGTGTCAAGAACTTGGCCACCAGCAGCTGGTTTGCAGAGGAGTTGATGTCTTATTTTCTTTTGTACTCATTTGTGTTCTTAATTTCTGTCGTTAATTGTTTTGCTAAAGATATCTTAGAGTTTAAGAGTTGCATAACTGATGAGCGAGGGGATACTCTTGTATCCGCAGGATCCAGATTCGAACTTGGATTTTTTACGCCGTATGGCAGCTCTGATGGCAGAAGATACTTGGGAATATGGTATTACAAATCAAATCCAAGTACGGTTGTTTGGGTTGCCAATCGAGACAGGCCACTTGCTGGTTCAGATGGTGTCTTTAAGATTGAGGATGATGGCAACCTCAAAGTATATAATGGAAATCAGAATCTTTATTGGTCAACAAACATTGGAAGTTCTGTACTCGATCACAGGACCCTGAAGCTAATGGATAATGGAAATCTGGTTTTGAGCTATGTAGATCAGGAAGACTTGTCTGAGCACATCCTCTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCTGGCATGGTAATGGATGATAACTTAGTGCTGACTTCATGGAAGAGCTATGATGATCCGGCTCAAGGGAACTTCACTTTTCAGCTAGATCAAGATGGAAGTCAATATGTCATTTGGAAGAGATCAGTTAAATACTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCTGCATTGTTATACCTTTTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATAGTGATACAAGGTTAGTATTGAACAGCTCCGGTCAGCTTCTATATCTAAACTGGGATGATCACAAAGTCTGGTCTCAGATTTGGGTAGAGCCGAGAGATAGATGCAGTGTGTATAATGCGTGTGGCGATTTTGCTAGCTGTAATAGTGAGGGTGGTATGGCTTGCAAATGCCTGCCTGGTTTTGAGCCCACCTCTCTAGAGAGTTGGAATATGGGAGATTATTCTGGTGGATGCATCAGGAAATCACCAATATGCAGTGTCGACAATGAAAGTGACACTTTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCAGACTTCCAGTTTAATGCAAAGGATGTCTTTGATTGCAAATTGGAGTGCCTTAACAACTGCCGGTGTCAGGCTTACTCATATTTTGAAGCTAATATCACTAGGCAGGGTGGGATTGATAATTCTGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGATGAATTTGATAATGGCCGTGACCTCAACGTTCGAGTAGCAGTTCAAGATCTAGAGTTGACTGTCAGAAATTGTGGAACATGTGGCACAAACCTCATTCCTTATCCGCTTAGCACAGGACCTGAATGTGGTGACCCAATGTACTTCAATTTTAACTGCAATGTGGCTACTGGCCAGGTTAACTTTGAAGCAGCAGGTGGAACGTACAAGGTTAAATTCATTGATTCAGAAGCGCGGAAATTTATCATTCAAACCAAGGAAGCTGGTGATTGTGGTGATAAAAATTGGATAAACAAAGCCCTTCAGCTGAACCAGTCATCTCTTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACCAATCCAGAGATTTTTTCTCTGAAAACCAGCAATGAAGTTGAAATCGGTTGGGAGCCTCCATTAGAGCCAACTTGTTCTTCAACTACAGACTGCAAAGACTGGCCTTACTCAACTTGCAACACGAGTAAAGATGGAAATAAAAGATGCCTTTGCATTACAAACTTCCATTGGAATGGCTGGAGCTTGAATTGCACCACAGATCACAACAAAGAAAAGGATGGAAGAGGCAAAACGAGCTTCTCTGTGATTATTGTTGCAACAACCATATGTATAGTCCTTCTGATTATTCTCTCATGTACTGGGTTTTATATTTACTTCTCCAAAACTGGGCTCATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGATCTAATACTTCACTTGTATGACAACGAGAGACGTGTCAAAGACATGATTGAATCGGGTCGGTTCAAAGAAGATGATACAAATGGAATAGACATTCCATTTTTTGACTTGGAAACAATTCTAATTGCGACAGGGAATTTCTCAAATGCAAATAAGCTTGGACAGGGAGGTTTTGGGCCAGTTTACAAGGGCAAGTTCCCTAGTGGGCAGGAGATTGCTGTAAAGAGGCTCTCGAGAGGTTCAGGACAAGGTTTTGAGGAGTTTAAGAACGAGGTTTTATTAATTGCGAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTATGAATACATGCCAAACAAAAGCTTAGACGCCTTTATATTCGATCAAAAGCTGAGTGTGGCATTGGATTGGGACGTGCGCTTCAATGTCATTTTGGGAATTGCTCGTGGCCTTCTTTATCTACATCAAGATTCGCGGTTGAGGATTATTCATAGGGATTTGAAGACGAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCTGACTTTGGCTTGGCGAGGATATTTGGAGGGAAAGAAACTGCGACGAATACCAGAAGGGTGGTAGGGACTTATGGTTATATGTCACCGGAATACGCATTGGACGGCATATTTTCTGTAAAATCTGATGTCTTTAGCTTCGGTGTAGTCGTAGTCGAGATCATTAGTGGAAAAAGGAACACAGGATTCTATCACTCAGAGAAATCTTTGAGTCTTCTAGGCTATGCTTGGGATTTATGGATGAAAGACGAAGGCTTGGAATTAATGGAGCCAACAGTGAGTGAGAATTGCAAAAGAGAAGAATATTTGAAATGTTTAAACGTGGGGCTGTTGTGCGTGCAGGAAGATCCATGGGATCGACCCACCATGTCAAATGTGGTCTTCATGCTCGGCAGCGAAACCGCAACTCTTCCATCTCCGAAACCACCGGCATTCGTCGTGCGGCGGTGCCCCTCAAGCAGAGCTTCTTCCTCCACCAAACCAGAAACTTTCTCCCATAATGAGTTGACAGTCACCTTACAAGAAGGTAGATAG 3168 41.92 MDEGNRGEGTCLLHSRSSELVAKRRSVKNLATSSWFAEELMSYFLLYSFVFLISVVNCFAKDILEFKSCITDERGDTLVSAGSRFELGFFTPYGSSDGRRYLGIWYYKSNPSTVVWVANRDRPLAGSDGVFKIEDDGNLKVYNGNQNLYWSTNIGSSVLDHRTLKLMDNGNLVLSYVDQEDLSEHILWQSFDYPTDTFLPGMVMDDNLVLTSWKSYDDPAQGNFTFQLDQDGSQYVIWKRSVKYWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYSDTRLVLNSSGQLLYLNWDDHKVWSQIWVEPRDRCSVYNACGDFASCNSEGGMACKCLPGFEPTSLESWNMGDYSGGCIRKSPICSVDNESDTFLSLKMMKAGNPDFQFNAKDVFDCKLECLNNCRCQAYSYFEANITRQGGIDNSACWIWSGDLNNLQDEFDNGRDLNVRVAVQDLELTVRNCGTCGTNLIPYPLSTGPECGDPMYFNFNCNVATGQVNFEAAGGTYKVKFIDSEARKFIIQTKEAGDCGDKNWINKALQLNQSSLFHVTSWCNFKETNPEIFSLKTSNEVEIGWEPPLEPTCSSTTDCKDWPYSTCNTSKDGNKRCLCITNFHWNGWSLNCTTDHNKEKDGRGKTSFSVIIVATTICIVLLIILSCTGFYIYFSKTGLIERQESRGNSQKDLILHLYDNERRVKDMIESGRFKEDDTNGIDIPFFDLETILIATGNFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSRGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDVRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTRRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVVEIISGKRNTGFYHSEKSLSLLGYAWDLWMKDEGLELMEPTVSENCKREEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLQEGR 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8813769 8817871 - CmoCh19G009790.1 Cmo19g00979 404139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00979 1055 ProSiteProfiles PAN/Apple domain profile. 373 461 IPR003609 -
Cmo19g00979 1055 CDD PAN_AP_plant 373 461 - -
Cmo19g00979 1055 Pfam PAN-like domain 373 445 IPR003609 -
Cmo19g00979 1055 SMART serkin_6 737 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00979 1055 MobiDBLite consensus disorder prediction 1030 1055 - -
Cmo19g00979 1055 SUPERFAMILY Protein kinase-like (PK-like) 721 1038 IPR011009 -
Cmo19g00979 1055 Pfam Protein tyrosine and serine/threonine kinase 740 1006 IPR001245 GO:0004672|GO:0006468
Cmo19g00979 1055 Pfam Domain of unknown function (DUF3403) 1010 1055 IPR021820 GO:0004674
Cmo19g00979 1055 Pfam S-locus glycoprotein domain 245 352 IPR000858 GO:0048544
Cmo19g00979 1055 Pfam D-mannose binding lectin 113 208 IPR001480 -
Cmo19g00979 1055 SUPERFAMILY alpha-D-mannose-specific plant lectins 114 219 IPR036426 -
Cmo19g00979 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 858 870 IPR008271 GO:0004672|GO:0006468
Cmo19g00979 1055 ProSiteProfiles Protein kinase domain profile. 737 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00979 1055 Gene3D Transferase(Phosphotransferase) domain 1 813 1015 - -
Cmo19g00979 1055 SMART blect_4 71 194 IPR001480 -
Cmo19g00979 1055 Gene3D - 62 191 IPR036426 -
Cmo19g00979 1055 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 59 1052 - -
Cmo19g00979 1055 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 59 1052 - -
Cmo19g00979 1055 ProSiteProfiles Bulb-type lectin domain profile. 63 187 IPR001480 -
Cmo19g00979 1055 CDD STKc_IRAK 743 1008 - -
Cmo19g00979 1055 Gene3D Phosphorylase Kinase; domain 1 700 812 - -
Cmo19g00979 1055 SMART ntp_6 377 460 IPR003609 -
Cmo19g00979 1055 CDD B_lectin 75 194 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01062 Cmo-Chr13:8829435 Cmo19g00979 Cmo-Chr19:8813769 8.87E-113 dispersed
Cmo19g00979 Cmo-Chr19:8813769 Cmo20g00597 Cmo-Chr20:2936558 0 dispersed
Cmo13g00708 Cmo-Chr13:7182329 Cmo19g00979 Cmo-Chr19:8813769 1.53E-70 wgd
Cmo19g00979 Cmo-Chr19:8813769 Cmo20g00596 Cmo-Chr20:2935475 2.99E-08 wgd
Cmo19g00979 Cmo-Chr19:8813769 Cmo03g00525 Cmo-Chr3:5400189 3.03E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75112 PF07714 PK_Tyr_Ser-Thr 2.30E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00979 - - csv:101217751 1995.7