Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00997 ATGAGATTTTTCTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATAGCTCCCCTACATACTCAAAGCTTCTGGTCATCAGCACCCTCAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGCTAGCAGTCCTATTGAGGAGTGCCCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCATCGAAATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTATTGCCTAGCGTTACATGTGGAACAGTTGAAGCACGGAGCATTGTCGAACCTGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAGTTAAATTCTGGGAAGCTGAATGCACTAAGATTGATGCTGCAAACAAAAAGGTTTTCTGCCGGTCATTAGTTGACAATAACTTGGTTGGAAATAGGGAGTTTGCTTTAGAATATGACTATTTGGTAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGCCATTTTCTCAAGGAAGTGCAAGATGCTCAGAAGATCCGCAAAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGACGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACCGGGGTTGAATTTGCTGCCGAGCTTCACGACTTCTTTAAAGAAGATTTGGTTTATTTATATCCTACGGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCAAAGAGATGGTATTGATGTGCACACAGGATGTCGAGTTATCAGTGTATCTGATAAGGAAATTAAGATGAAGGTGAAATCATCTGGAGAAGTCTGTTCAATACCGCATGGATTAATTGTGTGGTCTACAGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAAATTGGCCAGGGTAGTAGACGCATTCTAACCACTGATGAATGGCTTCGAGTGAAGGGCACTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGAAAGATATTGCCGCCATATTTGAAGCTGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTATAGATGATATCCTCATTAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGTGATGTAAAAGATCTATTGAAAGATTCTCAGGGACATGAGGACGAAGTAGATATTGAAGGATTTAAGTCGGCTCTTTCTCATGCTGACACGCAGATGAAAAATCTACCAGCTACCGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTAGCAGGTGCTTCAACCGTAGGGAGCAGTGCACTGAGAACCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTTATCAGTTTCTTCCCTTCCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAGGCCGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCGCAGCACCCAGTGGCTCTGGTATTCTGTATATGCAAGCAAGCAGGTCAGCTGGCGCACGAGGTATTTAGTGGTATCAGACTGGACAAGGAAGTTTGTATTTGGAAGAGACTCGAGCGGCATCTGA 1725 43.42 MRFFSFFTRASRAFHSSPTYSKLLVISTLSSGGLLAYADSQSDASSPIEECPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGTVEARSIVEPVRNIVKKRKGEVKFWEAECTKIDAANKKVFCRSLVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVQDAQKIRKSVIDCFEMAVIPSLSDEERRRNLHFVIVGGGPTGVEFAAELHDFFKEDLVYLYPTVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVHTGCRVISVSDKEIKMKVKSSGEVCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILTTDEWLRVKGTQNVYAIGDCATIDQRKIMKDIAAIFEAADKDNSGTLTVTEFQDVIDDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHEDEVDIEGFKSALSHADTQMKNLPATAQVAAQQGAYLSRCFNRREQCTENPEGPRRFKSSGRYQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGRSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFVFGRDSSGI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8878606 8883339 - CmoCh19G009970.1 Cmo19g00997 404157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00997 574 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B2, MITOCHONDRIAL-RELATED 6 574 - -
Cmo19g00997 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Cmo19g00997 574 PANTHER NADH DEHYDROGENASE 6 574 IPR045024 GO:0003954|GO:0006116
Cmo19g00997 574 SUPERFAMILY EF-hand 329 457 IPR011992 -
Cmo19g00997 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 384 IPR023753 GO:0016491
Cmo19g00997 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Cmo19g00997 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cmo19g00997 574 Gene3D - 47 397 - -
Cmo19g00997 574 Gene3D - 422 573 - -
Cmo19g00997 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Cmo19g00997 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Cmo19g00997 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cmo19g00997 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00128 Cmo19g00997 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01309 Cmo-Chr7:7314417 Cmo19g00997 Cmo-Chr19:8878606 4.40E-12 dispersed
Cmo19g00997 Cmo-Chr19:8878606 Cmo20g00366 Cmo-Chr20:1807087 2.12E-13 dispersed
Cmo13g00698 Cmo-Chr13:7122507 Cmo19g00997 Cmo-Chr19:8878606 0 wgd
Cmo19g00997 Cmo-Chr19:8878606 Cmo02g00128 Cmo-Chr2:654874 0 wgd
Cmo19g00997 Cmo-Chr19:8878606 Cmo03g00502 Cmo-Chr3:5290215 1.87E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00997 K03885 - csv:101203130 1058.51