Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01004 ATGGGTTGGAAGAGATCCTCGAGGAATGGCGATTTGAGGATCTGCGTGCAAGTTTTGGTCGGATTCGTCATCTGTTCAGCTCATGTTCTTGTCGGAGTTACGAATCCTGGGGATGTTGCTGCTATTAGTAGCTTACATACTGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCATTGGGCAAGATCCTTGCGGTGACGCATGGCAAGGTGTTGTATGTAATGATTCAAGCATCATTAAAATAATTGTTAATGCTGCTAATTTGGGAGGTGAACTGGGTGACGACTTGGGATTGTTTGCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGGAGTATTCCATCCAGTTTACCCATTACCATGCAGAACTTTTTTCTTTCAGCTAACGCGTTCACTGGAACTATTCCGAGTTCATTATCGTCTTTGATTCATCTGACAGCAATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCCTTCAGGCCATCTCTCAATTGGTGAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCTAGCAACTTATTGGCACTGACCACCCTGAATTTGCAGAACAATCAGCTGTCGGGTACCCTCGATGTTCTGCAAGACCTTCCACTAAAAAACTTGAATATAGAGAACAACCTTTTCTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAATCCATTTAATTCTTCTGTTACTCCGGCGCCAACTCCTTCTATATCTCCCCCATTAAAGCCAGCATCAGCACCTCGAGTTTCAGGAGCACCGCCCGTTTCAGGTGCACCGCCAGTTTCTGGAGCTCCACCGTCCTCTAAACGAAACCCAAAGAAACAGGCTGATGGACCATCAGCACCAGAGGAATCCAGTTCTGGAAGAAGCAAGAAAAACACTAAAAGGGTTGTTTTGATAACAATTGCAGTAATTTTGTCATTCATAATTTTGGTTTTGGCATGTGTGCTGTTTATGCCGAGGTGCAGAAGGAGAAGAGTTGATAGTAGTTCCAAGCAACATCAGATAGGTGCTTATAGGGGCGAGAGAGAGAATGCTGGAAATCAGGGATCCATGCACCATACAATTGATCAGATACCAAATGTTCCAAAAGCGGCAGTTGTGAGGCCAAAGCAGGAACCTCAACCAGTGGCTCAGAAGGTCCCAAAAGCTCATGAAGAAACACAGAAAGATATGCCAAGAATCAGCGCTGTTCCAAAGAAGGATCATCATGAAGTAGATATGAACCCACTCGATGTCTATCTAAGGCCTCCCCCTCCCCCACCACCACCACCACCACCACCTCCTGTTGAAGTGGTCTCTGCCGTGCCCATTGTTCCAGCTGAAGTTCCTCCCTTGAAGCCTCCCACTAAACATAAAATTACCTCAACTTTTGCAAAATCTTTTACCATTGCATCCCTTCAGCAATATACAAACAGCTTTTCGCAAGAGAATCTTCTGGGAGAAGGAATGCTTGGGAGTGTATATAGAGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAGCTGGATAAGAGAGCATTCAGTCAGCAAAAGGACGATGAATTTCTGGAGTTAGTGAATAATATCGATAGAATTCGGCACGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTTCGAGTATTGCAGCGGTGGAACATTGCAGGATGCCCTGCACTTAGATGAAGAGTTCAGAAAGAAACTTTCATGGAATGCTCGCATTAGAATTGCTCTTGGAGCTGCAAGAGCCTTGGAGTATCTACACGAGGTCTGTCAGCCGCCTGTAGTTCATAGGAATTTCAAGTCTGCAAATGTCCTGCTTGATGATGATCTTTCCGTGCGCGTTTCAGATTGTGGTCTGGCTCCATTGATATCGAAAGGAGCGGTTAGTCAGCTATCCGGTCAGCTTCTAACGAAATACGGTTACGGAGCACCAGAATTTGAATCAGGAGTTTATACACTTGAGAGCGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGTCGGATGTCTTATGACAGAACAAGGTCCCGAGGCGAGCAGTTTCTAGTCAGATGGGCGATTCCTCAGCTTCACGACATAGAGGCATTGACAAGCATGGTCGATCCTTCACTCAACGGTCGATACCCTGCCAAGTCGTTATCATACTTTGTCGATATCATATCAAAATGTGTTCAGTCGGAACCTGAATTCCGGCCACCAATGTCGACCGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCTCATGGCAGTGGTTCAAGTGAAGATTGA 2367 45.54 MGWKRSSRNGDLRICVQVLVGFVICSAHVLVGVTNPGDVAAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIVNAANLGGELGDDLGLFASIQTIDLSNNHIGGSIPSSLPITMQNFFLSANAFTGTIPSSLSSLIHLTAMSLNDNKLSGQIPDSLQAISQLVNLDLSNNNLSGPLPPSASNLLALTTLNLQNNQLSGTLDVLQDLPLKNLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVTPAPTPSISPPLKPASAPRVSGAPPVSGAPPVSGAPPSSKRNPKKQADGPSAPEESSSGRSKKNTKRVVLITIAVILSFIILVLACVLFMPRCRRRRVDSSSKQHQIGAYRGERENAGNQGSMHHTIDQIPNVPKAAVVRPKQEPQPVAQKVPKAHEETQKDMPRISAVPKKDHHEVDMNPLDVYLRPPPPPPPPPPPPPVEVVSAVPIVPAEVPPLKPPTKHKITSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIFEYCSGGTLQDALHLDEEFRKKLSWNARIRIALGAARALEYLHEVCQPPVVHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTKYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRSRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFVDIISKCVQSEPEFRPPMSTVVQDLLNMIRREPHGSGSSED 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8914284 8921568 - CmoCh19G010040.1 Cmo19g01004 404164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01004 788 PANTHER OS01G0253100 PROTEIN 23 787 IPR045271 GO:0004714|GO:0006468
Cmo19g01004 788 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 787 - -
Cmo19g01004 788 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
Cmo19g01004 788 MobiDBLite consensus disorder prediction 248 316 - -
Cmo19g01004 788 SUPERFAMILY Formin homology 2 domain (FH2 domain) 442 451 - -
Cmo19g01004 788 SUPERFAMILY L domain-like 52 241 - -
Cmo19g01004 788 Gene3D Transferase(Phosphotransferase) domain 1 577 784 - -
Cmo19g01004 788 Pfam Protein tyrosine and serine/threonine kinase 501 772 IPR001245 GO:0004672|GO:0006468
Cmo19g01004 788 SUPERFAMILY Protein kinase-like (PK-like) 473 772 IPR011009 -
Cmo19g01004 788 ProSiteProfiles Protein kinase domain profile. 498 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01004 788 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515
Cmo19g01004 788 MobiDBLite consensus disorder prediction 348 416 - -
Cmo19g01004 788 Gene3D Phosphorylase Kinase; domain 1 470 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01004 - - - csv:101213734 1222.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01937 Cmo19g01004 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01937 Cmo-Chr11:13388276 Cmo19g01004 Cmo-Chr19:8914284 0 dispersed
Cmo18g00544 Cmo-Chr18:4215426 Cmo19g01004 Cmo-Chr19:8914284 1.39E-48 dispersed
Cmo19g01004 Cmo-Chr19:8914284 Cmo01g00024 Cmo-Chr1:83641 7.86E-165 dispersed
Cmo19g01004 Cmo-Chr19:8914284 Cmo03g00498 Cmo-Chr3:5278539 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo18g00544 . 384 677 Strubbelig Receptor Gene Family AT1G11130 54.1 7.6e-86 315.8
Cmo13g00445 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.9e-85 313.2
Cmo17g00626 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.1e-83 307.8
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo01g00024 CCT 1 710 Strubbelig Receptor Gene Family AT1G53730 61.6 3.5e-211 732.3
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G53730 60.3 1.5e-201 700.3
Cmo17g00626 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-176 616.7
Cmo08g00808 CCT,CST 33 788 Strubbelig Receptor Gene Family AT1G53730 54.3 1.0e-173 607.8
Cmo01g00024 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 51.3 4.8e-181 632.1
Cmo17g00626 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 52.9 2.6e-155 546.6
Cmo08g00808 CCT,CST 42 786 Strubbelig Receptor Gene Family AT3G14350 50.9 2.7e-152 536.6
Cmo18g00544 . 332 707 Strubbelig Receptor Gene Family AT4G22130 82.2 8.4e-176 614.4
Cmo13g00445 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.9 7.6e-169 591.3
Cmo01g00024 CCT 404 726 Strubbelig Receptor Gene Family AT4G22130 63.4 2.1e-118 423.7
Cmo14g01254 . 389 720 Strubbelig Receptor Gene Family AT4G22130 62.5 1.4e-117 421.0
Cmo17g00626 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 3.0e-117 419.9
Cmo08g00808 CCT,CST 446 790 Strubbelig Receptor Gene Family AT4G22130 60.0 5.0e-112 402.5
Cmo11g01937 CST 393 717 Strubbelig Receptor Gene Family AT4G22130 56.8 1.8e-106 384.0
Cmo19g01004 CST 483 778 Strubbelig Receptor Gene Family AT4G22130 60.6 4.5e-105 379.4
Cmo04g01041 . 416 733 Strubbelig Receptor Gene Family AT4G22130 55.7 6.8e-101 365.5
Cmo03g00498 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.1 9.2e-98 355.1
Cmo15g01506 . 364 677 Strubbelig Receptor Gene Family AT4G22130 56.4 1.7e-96 350.9
Cmo14g00436 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 1.2e-92 338.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75114 PF07714 PK_Tyr_Ser-Thr 8.40E-42 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g01004 Cmo_Chr19 FPKM 21.325102 26.544334 72.318138 69.622925 103.321404 111.468842 101.74868 37.538513 38.461933 37.175694