Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01011 ATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACTTGTAGTAGCCAGAGCAATGGGGAATCCGTTTCTTCTTCGTGTATGGGAATTAGATTTCGAGGTCGAAAGCGATCGAACTCCGACCATGTTTATGTTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATCTTCTTGAATGGAAAGAGTAATTCTTCTTGTATTTTCACGCAACAAGGTCGCAAGGGCGTAAACCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCGGACGACACGATCTTTTGTGGTGTTTTTGATGGTCATGGACCTTACGGTCACCTTGTTTCTCGACGAGTGAGGGATACATTGCCTATAAAGTTGCTGTCGTTTTTTCAGTCTCCTCAGTTGAAGCAGAATGTCTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGACATCTCGAGAATGTGACGATTCTGAGAAGGATTGTTTCATCGAGGACTCGCAGAATTCGGTATGGCGAGATGCGTTCTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACAGCAGTCACCATAGTTAAACAGGGGTCAAATCTGTTCATGGGGTACATCGGGGACTCTCGAGCAATCCTTGCCTCGAAGGACGCCAATGATTCGACAGTGGCGGTTCAGTTGACCGTGGATCTTAAGCCAGATTTGCCAAGAGAAGCTGAAAGAATAAAACGGTGTAAAGGTAGGGTGTTTGCATTGCAAGATGAGCCTGAAGTGCCAAGGGTGTGGTTACCTTTCGACGATGCGCCCGGTTTAGCCATGGCTCGTGCTTTTGGAGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCACATCGAACCCTCACCGACGCTGATCAGTTCGTCGTTCTTGCATCAGACGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCGGCCTCATCCCGGGCATCAGCTGCGAGATCCGTGGTGGACTCTGCTGCTCGTGAATGGAAACTAAAATACCCGACCTCGAAAATGGATGATTGTGCTGTTGTCTGCTTATTTTTGGATGGGATGATGGACTCCGAATCCGATTGTGATGAACAAGGCTTCTCATCTGCAACGTCGCGTAGTATCCATTCGGGTGCTGCTATTGAATCCGATGATGGCCAGAAGTCTGAGCCATGTCTGCAAAGGAATAACACTGTGAGATCATCTGAGGACAACAAAACTTATGGGGGATTAGCTGATGATGACAGAGAGATTGGTGAAGCTGTACCTGCAGAAGATCAAAACTGGTCGGGTTTGGAAGGCGTCACTCGAGTGAACTCGCTCGTTCAACTTCCTAGATTTTCCGACAAAAGTCCAGTGTCGTAG 1416 46.82 MGGCVSTSSHSTCSSQSNGESVSSSCMGIRFRGRKRSNSDHVYVLQNLPSAPNRIFLNGKSNSSCIFTQQGRKGVNQDAMVVWEDFMSDDTIFCGVFDGHGPYGHLVSRRVRDTLPIKLLSFFQSPQLKQNVSGKTCFQRNLKTSRECDDSEKDCFIEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFVVLASDGVWDVLSNEEVVDIVSSASSRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGMMDSESDCDEQGFSSATSRSIHSGAAIESDDGQKSEPCLQRNNTVRSSEDNKTYGGLADDDREIGEAVPAEDQNWSGLEGVTRVNSLVQLPRFSDKSPVS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8942372 8945361 - CmoCh19G010110.1 Cmo19g01011 404171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01011 471 MobiDBLite consensus disorder prediction 1 24 - -
Cmo19g01011 471 MobiDBLite consensus disorder prediction 424 439 - -
Cmo19g01011 471 MobiDBLite consensus disorder prediction 396 444 - -
Cmo19g01011 471 CDD PP2Cc 62 369 IPR001932 -
Cmo19g01011 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Cmo19g01011 471 ProSiteProfiles PPM-type phosphatase domain profile. 63 369 IPR001932 -
Cmo19g01011 471 MobiDBLite consensus disorder prediction 407 422 - -
Cmo19g01011 471 Pfam Protein phosphatase 2C 164 347 IPR001932 -
Cmo19g01011 471 SMART PP2C_4 47 367 IPR001932 -
Cmo19g01011 471 Gene3D - 56 371 IPR036457 -
Cmo19g01011 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Cmo19g01011 471 SUPERFAMILY PP2C-like 54 371 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00117 Cmo19g01011 CCT
Cmo11g01944 Cmo19g01011 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01944 Cmo-Chr11:13426857 Cmo19g01011 Cmo-Chr19:8942372 0 wgd
Cmo19g01011 Cmo-Chr19:8942372 Cmo02g00117 Cmo-Chr2:615738 0 wgd
Cmo19g01011 Cmo-Chr19:8942372 Cmo20g00582 Cmo-Chr20:2863747 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01011 - - csv:101204594 832.787