Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g01017 | ATGGCGGAGGATAAGAAAACAGGGAAATCGAAGATGGTTCTTGATGAAAGAACCCCACAACTGAAATTTTCAAAGAAGAAGATCGACAAAGCATCTCAGCAATCAACAACAACAACAACAACAACCCAATTCGTTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCCTCTCATTTTCCGGCGTTTGGGTCGCCGGAGCAGCAGATGATTTCTTTTAGTTCCAATCAGCAACAGGGGATCGGCTATCCACCGTACTTCCTCGGTGGCGGCGACCCGGTGGCTACCCAGCAGAGACTTTTCAAGTATTGGAGCGATGCTTTTCATTTGAGTCCGAGAGGGAGAGCTATGATGATGAGCAGAATGGGGCCAGATGGGTGTCATTTGTTTGGACCGCCGGTGCAGCCCTTAAGCGCCACCAAGCTTTACAGAGGAGTTAGGCAGCGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTCCCTCGTAATCGAACTCGCCTTTGGTTAGGAACCTTCGACACCGCCGAAGACGCCGCCATGGCTTACGATCGCGAGGCCTTTAAATTACGAGGCGAAAATGCTCGACTCAATTTCCCCGAACGTTTCCTCAACAAAAACACTCCAAAAACAGAGACGAAAACAGAGCACACTAATCCAATTACAGAGGAGGCTCATGAAGACAGCGCTGTCGTTCTTCCGCCGTCGGAGGAAGAGAAACCGGATGAGCTGTTGACGGAGAGCGTTGGCGCATCGGAGGCGCCGGAGATGGTTTGGGGAGAAATGGAAGAGGCTTGGTTTAATGCAATTCCGGCAGGGTGGGGTCCGGGAAGCGCTGTTTGGGATCATTTAGACCCAACAAACAATTTGGTTCTTCAATCACAATTCCCTTTTGGTTCATCAAATCAGCCACAGATTAAGGACTCCGATGATAATCAGAACAAGGTAGAGAATTCTGAATCGGCTTCGTCATCGTCTTCCTCCGCTCCGATGAAGCTGTTCTTATGGAAAGATCAAGATTGA | 1014 | 49.11 | MAEDKKTGKSKMVLDERTPQLKFSKKKIDKASQQSTTTTTTTQFVSSSSSSSSSSSHFPAFGSPEQQMISFSSNQQQGIGYPPYFLGGGDPVATQQRLFKYWSDAFHLSPRGRAMMMSRMGPDGCHLFGPPVQPLSATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPERFLNKNTPKTETKTEHTNPITEEAHEDSAVVLPPSEEEKPDELLTESVGASEAPEMVWGEMEEAWFNAIPAGWGPGSAVWDHLDPTNNLVLQSQFPFGSSNQPQIKDSDDNQNKVENSESASSSSSSAPMKLFLWKDQD | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8961976 | 8963142 | + | CmoCh19G010170.1 | Cmo19g01017 | 404177 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g01017 | 337 | SUPERFAMILY | DNA-binding domain | 140 | 198 | IPR016177 | GO:0003677 | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 292 | 337 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 313 | 329 | - | - | |
Cmo19g01017 | 337 | CDD | AP2 | 139 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 | 234 | 334 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 30 | 60 | - | - | |
Cmo19g01017 | 337 | ProSiteProfiles | AP2/ERF domain profile. | 140 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 | 12 | 224 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 292 | 306 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 204 | 243 | - | - | |
Cmo19g01017 | 337 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 234 | 334 | - | - | |
Cmo19g01017 | 337 | Pfam | AP2 domain | 141 | 189 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | SMART | rav1_2 | 140 | 203 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | Gene3D | AP2/ERF domain | 140 | 199 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | PRINTS | Ethylene responsive element binding protein signature | 141 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | PRINTS | Ethylene responsive element binding protein signature | 163 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo19g01017 | 337 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 12 | 224 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cmo19g01017 | 337 | MobiDBLite | consensus disorder prediction | 202 | 246 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00639 | Cmo-Chr9:3198397 | Cmo19g01017 | Cmo-Chr19:8961976 | 3.19E-33 | dispersed | |
Cmo17g00099 | Cmo-Chr17:539405 | Cmo19g01017 | Cmo-Chr19:8961976 | 1.72E-27 | dispersed | |
Cmo19g01017 | Cmo-Chr19:8961976 | Cmo03g00836 | Cmo-Chr3:6662075 | 1.61E-24 | dispersed | |
Cmo19g01017 | Cmo-Chr19:8961976 | Cmo02g00110 | Cmo-Chr2:581478 | 2.75E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11671 | PF00847 | AP2 | 2.00E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g01017 | - | - | bhj:120078099 | 484.567 |