Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01017 ATGGCGGAGGATAAGAAAACAGGGAAATCGAAGATGGTTCTTGATGAAAGAACCCCACAACTGAAATTTTCAAAGAAGAAGATCGACAAAGCATCTCAGCAATCAACAACAACAACAACAACAACCCAATTCGTTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCCTCTCATTTTCCGGCGTTTGGGTCGCCGGAGCAGCAGATGATTTCTTTTAGTTCCAATCAGCAACAGGGGATCGGCTATCCACCGTACTTCCTCGGTGGCGGCGACCCGGTGGCTACCCAGCAGAGACTTTTCAAGTATTGGAGCGATGCTTTTCATTTGAGTCCGAGAGGGAGAGCTATGATGATGAGCAGAATGGGGCCAGATGGGTGTCATTTGTTTGGACCGCCGGTGCAGCCCTTAAGCGCCACCAAGCTTTACAGAGGAGTTAGGCAGCGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTCCCTCGTAATCGAACTCGCCTTTGGTTAGGAACCTTCGACACCGCCGAAGACGCCGCCATGGCTTACGATCGCGAGGCCTTTAAATTACGAGGCGAAAATGCTCGACTCAATTTCCCCGAACGTTTCCTCAACAAAAACACTCCAAAAACAGAGACGAAAACAGAGCACACTAATCCAATTACAGAGGAGGCTCATGAAGACAGCGCTGTCGTTCTTCCGCCGTCGGAGGAAGAGAAACCGGATGAGCTGTTGACGGAGAGCGTTGGCGCATCGGAGGCGCCGGAGATGGTTTGGGGAGAAATGGAAGAGGCTTGGTTTAATGCAATTCCGGCAGGGTGGGGTCCGGGAAGCGCTGTTTGGGATCATTTAGACCCAACAAACAATTTGGTTCTTCAATCACAATTCCCTTTTGGTTCATCAAATCAGCCACAGATTAAGGACTCCGATGATAATCAGAACAAGGTAGAGAATTCTGAATCGGCTTCGTCATCGTCTTCCTCCGCTCCGATGAAGCTGTTCTTATGGAAAGATCAAGATTGA 1014 49.11 MAEDKKTGKSKMVLDERTPQLKFSKKKIDKASQQSTTTTTTTQFVSSSSSSSSSSSHFPAFGSPEQQMISFSSNQQQGIGYPPYFLGGGDPVATQQRLFKYWSDAFHLSPRGRAMMMSRMGPDGCHLFGPPVQPLSATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPERFLNKNTPKTETKTEHTNPITEEAHEDSAVVLPPSEEEKPDELLTESVGASEAPEMVWGEMEEAWFNAIPAGWGPGSAVWDHLDPTNNLVLQSQFPFGSSNQPQIKDSDDNQNKVENSESASSSSSSAPMKLFLWKDQD 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8961976 8963142 + CmoCh19G010170.1 Cmo19g01017 404177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01017 337 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
Cmo19g01017 337 MobiDBLite consensus disorder prediction 292 337 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 313 329 - -
Cmo19g01017 337 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Cmo19g01017 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 234 334 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 1 60 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 30 60 - -
Cmo19g01017 337 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Cmo19g01017 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 12 224 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 292 306 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 204 243 - -
Cmo19g01017 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 234 334 - -
Cmo19g01017 337 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Cmo19g01017 337 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
Cmo19g01017 337 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Cmo19g01017 337 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Cmo19g01017 337 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Cmo19g01017 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 12 224 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 1 29 - -
Cmo19g01017 337 MobiDBLite consensus disorder prediction 202 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00639 Cmo-Chr9:3198397 Cmo19g01017 Cmo-Chr19:8961976 3.19E-33 dispersed
Cmo17g00099 Cmo-Chr17:539405 Cmo19g01017 Cmo-Chr19:8961976 1.72E-27 dispersed
Cmo19g01017 Cmo-Chr19:8961976 Cmo03g00836 Cmo-Chr3:6662075 1.61E-24 dispersed
Cmo19g01017 Cmo-Chr19:8961976 Cmo02g00110 Cmo-Chr2:581478 2.75E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11671 PF00847 AP2 2.00E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01017 - - bhj:120078099 484.567