Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01036 ATGAGCAGTGTTTGTGCTGAGGAGCAGAAATTTCAGTTTCAATTTCAACTGCCTCCTTCTTGTTCTTCGATTATTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAGGAAGACGGTGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGCGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACCGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCGGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAGTTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCCACTTCATCGCCGACATCGACGCTTATCGGAATGTCTCATCTCTCTCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGTTTTCAAGGTACAATCCAGATCCGTCCAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCACTTTAGCCGCCTCCGCCTCAAGACAGAGGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGATCAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGGCTCCGCCGCATCGGTGAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGCTGGGCCTCCGCCTCCGATCCGGATCTCGGATGGGTTAACGATCTTCTGATGTAA 1080 49.35 MSSVCAEEQKFQFQFQLPPSCSSIIEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPFSRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNATLAASASRQRIPWIDVSSLNTEDQLQFVLSPSTPNGSAASVNFSVNNKGNADNGWASASDPDLGWVNDLLM 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9049904 9050983 + CmoCh19G010360.1 Cmo19g01036 404196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01036 359 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Cmo19g01036 359 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Cmo19g01036 359 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Cmo19g01036 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 46 358 - -
Cmo19g01036 359 PANTHER UNKEMPT FAMILY MEMBER 46 358 IPR045234 -
Cmo19g01036 359 SUPERFAMILY CCCH zinc finger 109 139 IPR036855 GO:0046872
Cmo19g01036 359 Gene3D - 110 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01319 Cmo-Chr12:11538984 Cmo19g01036 Cmo-Chr19:9049904 1.70E-65 dispersed
Cmo16g00239 Cmo-Chr16:1052957 Cmo19g01036 Cmo-Chr19:9049904 1.55E-53 dispersed
Cmo19g01036 Cmo-Chr19:9049904 Cmo14g00457 Cmo-Chr14:2196576 1.29E-58 dispersed
Cmo11g01994 Cmo-Chr11:13660997 Cmo19g01036 Cmo-Chr19:9049904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11672 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01036 K23047 - csv:101211149 562.377