Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01042 ATGATTTCAAGGTCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGGTTCCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGACGACGATCAGGCCTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCCTGGAGTTTCAGTTGGAATGAAGATTCGCTGCTTTTGCAGCTTAAAGATGGGTTACCAGAAGATATGGAGGTTCTTTACGTCGGTTCTCTGAAAGTCGATATCCAACCCGACGAACAAGATGAGGTATCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTGATATTTTGGAAAATTTTTATGATGGTTTCTGCAAGAGGAATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCGATGTGGGAGGCATATGTCTCAGCAAATAAGTTATTTTTCCAGAAAGTTGTAGAGGTCATCAACCCTGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCTACTTTCTTGAGAAGACGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGCACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATCGGATTTCACACTTTCGATTATGCTCGCCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGCTATCTTGGATTGGAATACTACGGCAGGACGATTGGAATAAAGATAATGCCTGTTGGTATTCATATGAATCGGATTGAATCGGTGATGAAACTTGCAGACGAGGATGCTAAGACTAGGGAACTCACGCAGCAATTTGCAGGGAAGACGGTGGTGCTTGGTGTTGATGATATGGACATTTTCAAAGGTATTAACTTGAAATTGTTAGCCATGGAACAGATGCTAAAGCAACATCCAAAGTGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAACCCTGCCCGAGGCAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAATAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACCGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGCGTAGCAGTCACTGCTGTTAGAGATGGCATGAACTTAACTCCTTATGAGTATGTTGTCTGTAGACAGGGAATATCCACCTCTCAAAAATGCTTGAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATCGGGTGTACTCCATCACTGAGCGGAGCATTTCGTGTCAACCCATGGAATGTTGAGAGTACATCAGAGGCTTTTAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGACGTGGCTTATTGGTCTCGCAGTTTCTTGCAAGACATGGAGAGAACTTGCTCAGAACATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTCGGGCTGATAGTCGGGCCATTCTTTTGGACTACGATGGCACTGTGATGCCGCAAAACTCCATAAATAAGTCACCGAGCGAACAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATGCAAAAAATGTCGTCTTCATTGTGAGTGGACGAGGAAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTCTTGAGGCAGTCACAAAATGAGGAGTGGAAGATCTGCGGCCAAAATTCTGATTTCGGATGGATGCAGATAGCCGAACCTGTTATGAAATTATACACCGAGGCTACTGATGGTTCATCAATCGAACGAAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGCTTCGGATCGTCCCAGGCAAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATTGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTAGTGGCTGAAAAAATCTTCTCATCAATGGCGGAGGATGGGAACCTCGCCGACTTCGTGTTGTGTATAGGCGACGACAGATCGGACGAGGACATGTTCGAAATAATTGGTAATGCGTTGTCCAGTAATAATATTCTTTCTCCAACGGCGTCAGTTTTTGCCTGCACTGTTGGGCAAAAGCCAAGCAAAGCCAAATATTACTTGGACGACACAGCTGAAGTAATAAGCATGCTTGAATACCTGGCCGAAGCTTCTAGCCCATTGCCATCCTCTGAAGATGAAGAAGGTCAAAACGCTTCTTGA 2574 43.4 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPDEQDEVSQILLEKFRCIPTFLPPDILENFYDGFCKRNLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMNRIESVMKLADEDAKTRELTQQFAGKTVVLGVDDMDIFKGINLKLLAMEQMLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCTPSLSGAFRVNPWNVESTSEAFNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSEHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRADSRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQNSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGNLADFVLCIGDDRSDEDMFEIIGNALSSNNILSPTASVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSEDEEGQNAS 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9093586 9097177 - CmoCh19G010420.1 Cmo19g01042 404202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01042 857 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cmo19g01042 857 Pfam Trehalose-phosphatase 593 828 IPR003337 GO:0003824|GO:0005992
Cmo19g01042 857 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cmo19g01042 857 Gene3D - 718 851 IPR023214 -
Cmo19g01042 857 Gene3D - 589 694 IPR023214 -
Cmo19g01042 857 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 851 IPR001830 GO:0003824|GO:0005992
Cmo19g01042 857 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 851 - -
Cmo19g01042 857 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 796 IPR006379 -
Cmo19g01042 857 CDD HAD_TPP 591 831 - -
Cmo19g01042 857 TIGRFAM T6PP: trehalose-phosphatase 589 839 IPR003337 GO:0003824|GO:0005992
Cmo19g01042 857 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cmo19g01042 857 SUPERFAMILY HAD-like 590 839 IPR036412 -
Cmo19g01042 857 Gene3D Glycogen Phosphorylase B; 314 527 - -
Cmo19g01042 857 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01986 Cmo19g01042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01324 Cmo-Chr1:10528280 Cmo19g01042 Cmo-Chr19:9093586 4.26E-94 dispersed
Cmo03g01337 Cmo-Chr3:9942083 Cmo19g01042 Cmo-Chr19:9093586 0 dispersed
Cmo04g01112 Cmo-Chr4:5669684 Cmo19g01042 Cmo-Chr19:9093586 0 dispersed
Cmo16g01224 Cmo-Chr16:8764732 Cmo19g01042 Cmo-Chr19:9093586 0 dispersed
Cmo11g01986 Cmo-Chr11:13631629 Cmo19g01042 Cmo-Chr19:9093586 0 wgd
Cmo18g00419 Cmo-Chr18:2755285 Cmo19g01042 Cmo-Chr19:9093586 5.85E-142 wgd
Cmo19g01042 Cmo-Chr19:9093586 Cmo07g00166 Cmo-Chr7:878233 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01042 K16055 - csv:101209914 1686.77