Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g01042 | ATGATTTCAAGGTCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGGTTCCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGACGACGATCAGGCCTACAGTGTGACATCTGAAAACCCATCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCCTGGAGTTTCAGTTGGAATGAAGATTCGCTGCTTTTGCAGCTTAAAGATGGGTTACCAGAAGATATGGAGGTTCTTTACGTCGGTTCTCTGAAAGTCGATATCCAACCCGACGAACAAGATGAGGTATCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTGATATTTTGGAAAATTTTTATGATGGTTTCTGCAAGAGGAATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCGATGTGGGAGGCATATGTCTCAGCAAATAAGTTATTTTTCCAGAAAGTTGTAGAGGTCATCAACCCTGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCTACTTTCTTGAGAAGACGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGCACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATCGGATTTCACACTTTCGATTATGCTCGCCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGCTATCTTGGATTGGAATACTACGGCAGGACGATTGGAATAAAGATAATGCCTGTTGGTATTCATATGAATCGGATTGAATCGGTGATGAAACTTGCAGACGAGGATGCTAAGACTAGGGAACTCACGCAGCAATTTGCAGGGAAGACGGTGGTGCTTGGTGTTGATGATATGGACATTTTCAAAGGTATTAACTTGAAATTGTTAGCCATGGAACAGATGCTAAAGCAACATCCAAAGTGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAACCCTGCCCGAGGCAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAATAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACCGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGCGTAGCAGTCACTGCTGTTAGAGATGGCATGAACTTAACTCCTTATGAGTATGTTGTCTGTAGACAGGGAATATCCACCTCTCAAAAATGCTTGAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATCGGGTGTACTCCATCACTGAGCGGAGCATTTCGTGTCAACCCATGGAATGTTGAGAGTACATCAGAGGCTTTTAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGACGTGGCTTATTGGTCTCGCAGTTTCTTGCAAGACATGGAGAGAACTTGCTCAGAACATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTCGGGCTGATAGTCGGGCCATTCTTTTGGACTACGATGGCACTGTGATGCCGCAAAACTCCATAAATAAGTCACCGAGCGAACAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATGCAAAAAATGTCGTCTTCATTGTGAGTGGACGAGGAAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTCTTGAGGCAGTCACAAAATGAGGAGTGGAAGATCTGCGGCCAAAATTCTGATTTCGGATGGATGCAGATAGCCGAACCTGTTATGAAATTATACACCGAGGCTACTGATGGTTCATCAATCGAACGAAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGCTTCGGATCGTCCCAGGCAAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATTGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTAGTGGCTGAAAAAATCTTCTCATCAATGGCGGAGGATGGGAACCTCGCCGACTTCGTGTTGTGTATAGGCGACGACAGATCGGACGAGGACATGTTCGAAATAATTGGTAATGCGTTGTCCAGTAATAATATTCTTTCTCCAACGGCGTCAGTTTTTGCCTGCACTGTTGGGCAAAAGCCAAGCAAAGCCAAATATTACTTGGACGACACAGCTGAAGTAATAAGCATGCTTGAATACCTGGCCGAAGCTTCTAGCCCATTGCCATCCTCTGAAGATGAAGAAGGTCAAAACGCTTCTTGA | 2574 | 43.4 | MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPDEQDEVSQILLEKFRCIPTFLPPDILENFYDGFCKRNLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMNRIESVMKLADEDAKTRELTQQFAGKTVVLGVDDMDIFKGINLKLLAMEQMLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCTPSLSGAFRVNPWNVESTSEAFNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSEHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRADSRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQNSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGNLADFVLCIGDDRSDEDMFEIIGNALSSNNILSPTASVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSEDEEGQNAS | 857 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 9093586 | 9097177 | - | CmoCh19G010420.1 | Cmo19g01042 | 404202 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g01042 | 857 | CDD | GT20_TPS | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo19g01042 | 857 | Pfam | Trehalose-phosphatase | 593 | 828 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo19g01042 | 857 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 60 | 546 | - | - | |
Cmo19g01042 | 857 | Gene3D | - | 718 | 851 | IPR023214 | - | |
Cmo19g01042 | 857 | Gene3D | - | 589 | 694 | IPR023214 | - | |
Cmo19g01042 | 857 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 851 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo19g01042 | 857 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED | 1 | 851 | - | - | |
Cmo19g01042 | 857 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 592 | 796 | IPR006379 | - | |
Cmo19g01042 | 857 | CDD | HAD_TPP | 591 | 831 | - | - | |
Cmo19g01042 | 857 | TIGRFAM | T6PP: trehalose-phosphatase | 589 | 839 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo19g01042 | 857 | Gene3D | Glycogen Phosphorylase B; | 53 | 313 | - | - | |
Cmo19g01042 | 857 | SUPERFAMILY | HAD-like | 590 | 839 | IPR036412 | - | |
Cmo19g01042 | 857 | Gene3D | Glycogen Phosphorylase B; | 314 | 527 | - | - | |
Cmo19g01042 | 857 | Pfam | Glycosyltransferase family 20 | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01986 | Cmo19g01042 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01324 | Cmo-Chr1:10528280 | Cmo19g01042 | Cmo-Chr19:9093586 | 4.26E-94 | dispersed | |
Cmo03g01337 | Cmo-Chr3:9942083 | Cmo19g01042 | Cmo-Chr19:9093586 | 0 | dispersed | |
Cmo04g01112 | Cmo-Chr4:5669684 | Cmo19g01042 | Cmo-Chr19:9093586 | 0 | dispersed | |
Cmo16g01224 | Cmo-Chr16:8764732 | Cmo19g01042 | Cmo-Chr19:9093586 | 0 | dispersed | |
Cmo11g01986 | Cmo-Chr11:13631629 | Cmo19g01042 | Cmo-Chr19:9093586 | 0 | wgd | |
Cmo18g00419 | Cmo-Chr18:2755285 | Cmo19g01042 | Cmo-Chr19:9093586 | 5.85E-142 | wgd | |
Cmo19g01042 | Cmo-Chr19:9093586 | Cmo07g00166 | Cmo-Chr7:878233 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g01042 | K16055 | - | csv:101209914 | 1686.77 |