Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01045 ATGGACCGCCGTGTTCGTACGAACCCATTTGTCTCAGAGCAAGAAGATCCAGAAGCCACGTCGGACGACGGCCTACCGGAGTCACCCTCCGACGACAATGATTCAAAACCCGCCGCCGGCCCCCCTCCCAAAAAGAGTAGAAGGGGAGTTCAGAAGAGAGTAGTGTCCGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCCAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAATCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACAATTCCTCGCCGTCCTCCGCCGCGATCGCCGCTGCGCCCGACTCCTCATCCCCTGGGAGCACTACGACGTCGTCGTCAACTTCCTCCGGCGACCATACGAACACCGATCCCTCATTGTCGGCAGCGGCGAAATTCGAGGAGGCGGCTGCGGTTTTCGCGAGTCAGCCAGAACTAGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGCGATTTTGGATGGTTGGCTGACGTGGCATACGATAGAATCCTGGAGGGCCCAATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACAAGAGGAAATGACGAGGACGAATCGTTATTTGCTGACCTTGGGGAGTTACCTGAAGGCTCTATGGTTTTCGGGCGACGGCGAGCGGTCCAACCGGACGGACCGAACCGGACACGTGGCAGAGTATTAGACTGCTAG 888 56.53 MDRRVRTNPFVSEQEDPEATSDDGLPESPSDDNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHNSSPSSAAIAAAPDSSSPGSTTTSSSTSSGDHTNTDPSLSAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTRGNDEDESLFADLGELPEGSMVFGRRRAVQPDGPNRTRGRVLDC 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9102316 9104725 - CmoCh19G010450.1 Cmo19g01045 404205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01045 295 MobiDBLite consensus disorder prediction 1 115 - -
Cmo19g01045 295 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g01045 295 Gene3D WRKY domain 62 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo19g01045 295 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g01045 295 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 279 IPR044810 GO:0003700
Cmo19g01045 295 PANTHER OS01G0750100 PROTEIN 20 279 - -
Cmo19g01045 295 MobiDBLite consensus disorder prediction 146 182 - -
Cmo19g01045 295 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g01045 295 MobiDBLite consensus disorder prediction 136 182 - -
Cmo19g01045 295 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00508 Cmo-Chr18:3605353 Cmo19g01045 Cmo-Chr19:9102316 3.05E-34 dispersed
Cmo19g01045 Cmo-Chr19:9102316 Cmo06g01113 Cmo-Chr6:8571167 4.32E-29 dispersed
Cmo11g01984 Cmo-Chr11:13623437 Cmo19g01045 Cmo-Chr19:9102316 1.14E-146 wgd
Cmo13g00614 Cmo-Chr13:6701906 Cmo19g01045 Cmo-Chr19:9102316 4.92E-45 wgd
Cmo18g00408 Cmo-Chr18:2667866 Cmo19g01045 Cmo-Chr19:9102316 1.87E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11674 PF03106 WRKY 1.10E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01045 - - csv:101209422 466.848