Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01052 ATGCTCAGCTCTCGCCCAGCTTCTACGCCAAAACCTGTCCCCGACTCGAAGGAATCGTTCGTTCGGGGTTGCGATGGTTCTATATTGCTCGATGATAGTTCAACATTTACAAGCGAAAAAAATGCATTTCCAAATAGAAACTCAGCTAGAGGATTTGAAGTGATTGACGATATTAAAACTCAGGTCGAAGCTGCTTGTAAAGCCACCGTTTCCTGTGCTGATATTCTTGCTCTCGCTACTCGCGATGGGGTCGCTTTGCTCGGAGGGCCGAGTTGGGCTGTACCACTCGGACGAAAGGACTCGAGGACTGCAAGCGAGAGTGGAGCAAACAGCAACCTTCCAGGGCCAGGCTCCGACCTCTCGACGCTCATCTCGATGTTTGCTGCCCAAGGGCTCAATGCTCGTGACATGACAGCCCTCTCGGGTGGTCACACCATAGGCGTGGCTAAATGTCAATTCTTCCGAACTCGAATCTACAACGAGACCAATATCGATCCCGCCTTCGCCACCCAACGGCAAGCCAACTGTCCGTTCTCGGGCGGTGACACAAACTTAGCCCCTCTCGACTCGACCAACAATATGTTCGACAACAAGTATTTCGTAGACCTGACGAACAAGCGCGGGCTGTTTCATTCGGACCAAGTACTGTTCAACGGCGGCTCACAAGACGCGTTGGTTCGGACTTACAGTACGAGTCCCGCAACCTTTAGAGCGGATTTTGTTAGCGCCATGATCAAGATGGGGAATCTCGGTCCTCCAGCTGGAGCCGCCAGTGAGATTAGACTAAATTGCAGGGTGTGCTCTGCTATTCACCGTCGGCTACCGGAGTTTCTGCGGCGACGGCCTTGGCTTTGGAATGATCCTCTGAATCTCTTCAGGCTACACTCTGATTCTGGAATGGACTTCGATAAGGAAATGTCATCGACTATTGTAGAAAGTAAGGATGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGGGAAAATGGCGAGCCAAAACAGACTATTAGCTACATGGCGGAACGTGTTGTTGGTTCCGGATCGTTTGGAATTGTTTTCCAGGCTAAATGCTTGGAAACTGGGGAGACTGTTGCAATAAAGAAAGTCTTGCAGGACAGACGTTATAAGAATCGTGAGCTGCAGTTAATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCATTGTTTTTTTTCTACAACTAGTAAGGATGAACTTTTCTTAAATCTGGTCATGGAATACGTTCCCGAGACTATGTATCGGGTACTGAAGCACTACTGCAATATGAACCAGAGGATGCCACTCATCTATGTGAAACTTTATACTTATCAAATCTTCAGGGGACTAGCTTATATACACACTGTTCCTGGAGTTTGTCACCGCGATGTAAAGCCTCATAATATTTTGGTTGATCCTCTCACGCATCAGGTCAAGCTTTGTGATTTTGGAAGCGCAAAAGTCCTGGTTAAAGGTGAAGCAAACATCGCTTACATATGCTCCCGTTACTATCGAGCTCCAGAGCTCATATTTGGTGCAACAGAGTACTCTACGTCCATCGACATATGGTCTGCTGGCTGTGTTCTTGCCGAGCTGCTTCTAGGCCAGCCATTGTTTCCTGGGGAAAGTGCCGTAGATCAACTGGTTGAGATAATCAAGGTTCTTGGCACTCCAACTCGAGAAGAAATTCGATGCATGAATCCAAATTATACAGATTTTAGGTTTCCTCAGATCAAAGCCCATCCGTGGCACAAGGTCTTTCACAAACGAATGCCACCCGAAGCTATTGACCTTGCTTCAAGGGTTCTTCAATATTCTCCCGGCCTCCGGTCCACTGCACTTGAAGCATGTGCGCATCCCTTCTTTCATGAACTTCGGGAGCCTAATGCCCGCCTCCCCAATGGTCGTCCGTTGCCCCCACTCTTCAATTTTAAACAGGAACTTTCCGGAGCATCACCTGAATTGATAAAGAGGCTCATACCAGAGCATGTCCGGCGGCAGACTGGACTAGCGTTACCTCATCAAGCAGGCAGAGAAGAAAAGCAATCAAATGACTGTGGGGATCTCCCGATGAGCCAATAA 2085 48.2 MLSSRPASTPKPVPDSKESFVRGCDGSILLDDSSTFTSEKNAFPNRNSARGFEVIDDIKTQVEAACKATVSCADILALATRDGVALLGGPSWAVPLGRKDSRTASESGANSNLPGPGSDLSTLISMFAAQGLNARDMTALSGGHTIGVAKCQFFRTRIYNETNIDPAFATQRQANCPFSGGDTNLAPLDSTNNMFDNKYFVDLTNKRGLFHSDQVLFNGGSQDALVRTYSTSPATFRADFVSAMIKMGNLGPPAGAASEIRLNCRVCSAIHRRLPEFLRRRPWLWNDPLNLFRLHSDSGMDFDKEMSSTIVESKDAVTGHIISTTIGGENGEPKQTISYMAERVVGSGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYCNMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPHNILVDPLTHQVKLCDFGSAKVLVKGEANIAYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRVLQYSPGLRSTALEACAHPFFHELREPNARLPNGRPLPPLFNFKQELSGASPELIKRLIPEHVRRQTGLALPHQAGREEKQSNDCGDLPMSQ 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9135234 9142774 - CmoCh19G010520.1 Cmo19g01052 404212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01052 694 CDD STKc_GSK3 334 626 IPR039192 -
Cmo19g01052 694 PANTHER OS02G0236200 PROTEIN 302 672 - -
Cmo19g01052 694 MobiDBLite consensus disorder prediction 671 694 - -
Cmo19g01052 694 Gene3D Transferase(Phosphotransferase) domain 1 419 666 - -
Cmo19g01052 694 Pfam Peroxidase 19 231 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Cmo19g01052 694 SMART serkin_6 339 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01052 694 Gene3D Phosphorylase Kinase; domain 1 324 418 - -
Cmo19g01052 694 PRINTS Plant peroxidase signature 50 63 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 10 30 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 186 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 242 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 69 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 135 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 202 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Plant peroxidase signature 88 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Haem peroxidase superfamily signature 136 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Haem peroxidase superfamily signature 70 87 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Haem peroxidase superfamily signature 88 100 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 302 672 - -
Cmo19g01052 694 Pfam Protein kinase domain 339 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01052 694 SUPERFAMILY Protein kinase-like (PK-like) 338 648 IPR011009 -
Cmo19g01052 694 CDD secretory_peroxidase 20 266 IPR033905 GO:0004601|GO:0042744
Cmo19g01052 694 SUPERFAMILY Heme-dependent peroxidases 19 266 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 ProSiteProfiles Protein kinase domain profile. 339 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01052 694 Gene3D Peroxidase, domain 2 114 247 - -
Cmo19g01052 694 ProSitePatterns Peroxidases proximal heme-ligand signature. 136 146 IPR019793 -
Cmo19g01052 694 ProSiteProfiles Plant heme peroxidase family profile. 18 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo19g01052 694 ProSitePatterns Protein kinases ATP-binding region signature. 345 369 IPR017441 GO:0005524
Cmo19g01052 694 Gene3D - 18 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01978 Cmo-Chr11:13594355 Cmo19g01052 Cmo-Chr19:9135234 0 dispersed
Cmo19g01052 Cmo-Chr19:9135234 Cmo10g01253 Cmo-Chr10:12716996 0 dispersed
Cmo11g01977 Cmo-Chr11:13592179 Cmo19g01052 Cmo-Chr19:9135234 1.32E-131 wgd
Cmo19g01052 Cmo-Chr19:9135234 Cmo02g00088 Cmo-Chr2:463378 0 wgd
Cmo19g01052 Cmo-Chr19:9135234 Cmo20g00230 Cmo-Chr20:1110990 0 wgd
Cmo19g01052 Cmo-Chr19:9135234 Cmo07g00174 Cmo-Chr7:922423 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75116 PF00069 Pkinase 4.70E-62 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01052 K14502 - cit:102626148 735.332