Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g01052 | ATGCTCAGCTCTCGCCCAGCTTCTACGCCAAAACCTGTCCCCGACTCGAAGGAATCGTTCGTTCGGGGTTGCGATGGTTCTATATTGCTCGATGATAGTTCAACATTTACAAGCGAAAAAAATGCATTTCCAAATAGAAACTCAGCTAGAGGATTTGAAGTGATTGACGATATTAAAACTCAGGTCGAAGCTGCTTGTAAAGCCACCGTTTCCTGTGCTGATATTCTTGCTCTCGCTACTCGCGATGGGGTCGCTTTGCTCGGAGGGCCGAGTTGGGCTGTACCACTCGGACGAAAGGACTCGAGGACTGCAAGCGAGAGTGGAGCAAACAGCAACCTTCCAGGGCCAGGCTCCGACCTCTCGACGCTCATCTCGATGTTTGCTGCCCAAGGGCTCAATGCTCGTGACATGACAGCCCTCTCGGGTGGTCACACCATAGGCGTGGCTAAATGTCAATTCTTCCGAACTCGAATCTACAACGAGACCAATATCGATCCCGCCTTCGCCACCCAACGGCAAGCCAACTGTCCGTTCTCGGGCGGTGACACAAACTTAGCCCCTCTCGACTCGACCAACAATATGTTCGACAACAAGTATTTCGTAGACCTGACGAACAAGCGCGGGCTGTTTCATTCGGACCAAGTACTGTTCAACGGCGGCTCACAAGACGCGTTGGTTCGGACTTACAGTACGAGTCCCGCAACCTTTAGAGCGGATTTTGTTAGCGCCATGATCAAGATGGGGAATCTCGGTCCTCCAGCTGGAGCCGCCAGTGAGATTAGACTAAATTGCAGGGTGTGCTCTGCTATTCACCGTCGGCTACCGGAGTTTCTGCGGCGACGGCCTTGGCTTTGGAATGATCCTCTGAATCTCTTCAGGCTACACTCTGATTCTGGAATGGACTTCGATAAGGAAATGTCATCGACTATTGTAGAAAGTAAGGATGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGGGAAAATGGCGAGCCAAAACAGACTATTAGCTACATGGCGGAACGTGTTGTTGGTTCCGGATCGTTTGGAATTGTTTTCCAGGCTAAATGCTTGGAAACTGGGGAGACTGTTGCAATAAAGAAAGTCTTGCAGGACAGACGTTATAAGAATCGTGAGCTGCAGTTAATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCATTGTTTTTTTTCTACAACTAGTAAGGATGAACTTTTCTTAAATCTGGTCATGGAATACGTTCCCGAGACTATGTATCGGGTACTGAAGCACTACTGCAATATGAACCAGAGGATGCCACTCATCTATGTGAAACTTTATACTTATCAAATCTTCAGGGGACTAGCTTATATACACACTGTTCCTGGAGTTTGTCACCGCGATGTAAAGCCTCATAATATTTTGGTTGATCCTCTCACGCATCAGGTCAAGCTTTGTGATTTTGGAAGCGCAAAAGTCCTGGTTAAAGGTGAAGCAAACATCGCTTACATATGCTCCCGTTACTATCGAGCTCCAGAGCTCATATTTGGTGCAACAGAGTACTCTACGTCCATCGACATATGGTCTGCTGGCTGTGTTCTTGCCGAGCTGCTTCTAGGCCAGCCATTGTTTCCTGGGGAAAGTGCCGTAGATCAACTGGTTGAGATAATCAAGGTTCTTGGCACTCCAACTCGAGAAGAAATTCGATGCATGAATCCAAATTATACAGATTTTAGGTTTCCTCAGATCAAAGCCCATCCGTGGCACAAGGTCTTTCACAAACGAATGCCACCCGAAGCTATTGACCTTGCTTCAAGGGTTCTTCAATATTCTCCCGGCCTCCGGTCCACTGCACTTGAAGCATGTGCGCATCCCTTCTTTCATGAACTTCGGGAGCCTAATGCCCGCCTCCCCAATGGTCGTCCGTTGCCCCCACTCTTCAATTTTAAACAGGAACTTTCCGGAGCATCACCTGAATTGATAAAGAGGCTCATACCAGAGCATGTCCGGCGGCAGACTGGACTAGCGTTACCTCATCAAGCAGGCAGAGAAGAAAAGCAATCAAATGACTGTGGGGATCTCCCGATGAGCCAATAA | 2085 | 48.2 | MLSSRPASTPKPVPDSKESFVRGCDGSILLDDSSTFTSEKNAFPNRNSARGFEVIDDIKTQVEAACKATVSCADILALATRDGVALLGGPSWAVPLGRKDSRTASESGANSNLPGPGSDLSTLISMFAAQGLNARDMTALSGGHTIGVAKCQFFRTRIYNETNIDPAFATQRQANCPFSGGDTNLAPLDSTNNMFDNKYFVDLTNKRGLFHSDQVLFNGGSQDALVRTYSTSPATFRADFVSAMIKMGNLGPPAGAASEIRLNCRVCSAIHRRLPEFLRRRPWLWNDPLNLFRLHSDSGMDFDKEMSSTIVESKDAVTGHIISTTIGGENGEPKQTISYMAERVVGSGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYCNMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPHNILVDPLTHQVKLCDFGSAKVLVKGEANIAYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRVLQYSPGLRSTALEACAHPFFHELREPNARLPNGRPLPPLFNFKQELSGASPELIKRLIPEHVRRQTGLALPHQAGREEKQSNDCGDLPMSQ | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 9135234 | 9142774 | - | CmoCh19G010520.1 | Cmo19g01052 | 404212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g01052 | 694 | CDD | STKc_GSK3 | 334 | 626 | IPR039192 | - | |
Cmo19g01052 | 694 | PANTHER | OS02G0236200 PROTEIN | 302 | 672 | - | - | |
Cmo19g01052 | 694 | MobiDBLite | consensus disorder prediction | 671 | 694 | - | - | |
Cmo19g01052 | 694 | Gene3D | Transferase(Phosphotransferase) domain 1 | 419 | 666 | - | - | |
Cmo19g01052 | 694 | Pfam | Peroxidase | 19 | 231 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 460 | 472 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo19g01052 | 694 | SMART | serkin_6 | 339 | 623 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo19g01052 | 694 | Gene3D | Phosphorylase Kinase; domain 1 | 324 | 418 | - | - | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 50 | 63 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 10 | 30 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 186 | 201 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 242 | 255 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 69 | 79 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 135 | 147 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 202 | 219 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Plant peroxidase signature | 88 | 103 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Haem peroxidase superfamily signature | 136 | 151 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Haem peroxidase superfamily signature | 70 | 87 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Haem peroxidase superfamily signature | 88 | 100 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PRINTS | Haem peroxidase superfamily signature | 188 | 203 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | PANTHER | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 302 | 672 | - | - | |
Cmo19g01052 | 694 | Pfam | Protein kinase domain | 339 | 623 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo19g01052 | 694 | SUPERFAMILY | Protein kinase-like (PK-like) | 338 | 648 | IPR011009 | - | |
Cmo19g01052 | 694 | CDD | secretory_peroxidase | 20 | 266 | IPR033905 | GO:0004601|GO:0042744 | |
Cmo19g01052 | 694 | SUPERFAMILY | Heme-dependent peroxidases | 19 | 266 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | ProSiteProfiles | Protein kinase domain profile. | 339 | 623 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo19g01052 | 694 | Gene3D | Peroxidase, domain 2 | 114 | 247 | - | - | |
Cmo19g01052 | 694 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 136 | 146 | IPR019793 | - | |
Cmo19g01052 | 694 | ProSiteProfiles | Plant heme peroxidase family profile. | 18 | 268 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo19g01052 | 694 | ProSitePatterns | Protein kinases ATP-binding region signature. | 345 | 369 | IPR017441 | GO:0005524 | |
Cmo19g01052 | 694 | Gene3D | - | 18 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01978 | Cmo-Chr11:13594355 | Cmo19g01052 | Cmo-Chr19:9135234 | 0 | dispersed | |
Cmo19g01052 | Cmo-Chr19:9135234 | Cmo10g01253 | Cmo-Chr10:12716996 | 0 | dispersed | |
Cmo11g01977 | Cmo-Chr11:13592179 | Cmo19g01052 | Cmo-Chr19:9135234 | 1.32E-131 | wgd | |
Cmo19g01052 | Cmo-Chr19:9135234 | Cmo02g00088 | Cmo-Chr2:463378 | 0 | wgd | |
Cmo19g01052 | Cmo-Chr19:9135234 | Cmo20g00230 | Cmo-Chr20:1110990 | 0 | wgd | |
Cmo19g01052 | Cmo-Chr19:9135234 | Cmo07g00174 | Cmo-Chr7:922423 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75116 | PF00069 | Pkinase | 4.70E-62 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g01052 | K14502 | - | cit:102626148 | 735.332 |