Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01053 ATGGAAGTTGAAGACGATCACAGAAGAAAAGAGCTACTCGTTCTTGTGGTAATCGTTGTACTTGCTTCCCTCTCTCTCGTTTCATTGCTCGTCGCTTTCAGCTATTACTGCTATATCAGCCACAAGGTCTCCAAGCGCCTCAAGATCCGCAAAAGGGTTGATCTTGAGGACGAAGGTAGTTTTGAAAATGTTGAAAAAAATTCCACTGAGAAAGGCCTCCAATTGTTCACCTTCAAGCAGCTATACTCAGCGACCGGTGGTTTCAGCAAGTCAAATGTGGTTGGGCATGGTAGCTTTGGGTGTGTATATCGGGGAGTCCTTAACGATGGGCGAAAGGTTGCGATTAAGCTTATGGATCAAGCAGGGAAGCAGGGAGAGGAGGAATTTAAAGTGGAGGTGGACTTGTTAAGTCGGCTTCATTCGCCATATTTGTTGGCATTGCTTGGGTATTGCTCAGATAACAATCATAAAGTGCTGGTATACGAGTTCATGGTGAATGGCGGTCTGCAAGAACATTTATACCCTGTTAGGAGATCAAATTCCGTCAGCGTTAAGTTGGACTGGGAAACACGGCTGAGAGTTTCTCTGGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACATGTAAGCCACCCTGTAATTCATAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAAGATCTTCATGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGATAAAGCCGGTGGTCACGTCTCCACTCGAGTATTGGGGACACAAGGATATGTTGCCCCTGAGTATGCTCTAACAGGGCATTTAACAACTAAGTCAGATGTGTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACAGGCAGAGTGCCAGTTGATATAAAGAGAGCTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTCTGCCGAGGCTGACTGATAGGGAGGGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCGGTACTCCATGAAGGACGTTGTTCAAGTAGCCGCAATCGCAGCAATGTGTGTTCAACCAGAGGCGGATTACAGGCCGCTGATGGTCGACGTTGTCCAGTCACTGGTTCCCCTGGTGAGAAGTTACCGGACAACTTCAAAGATCGGTAGCAGTTCGAGTTCCAGCGCTTCCAAGTCGCCTACAGCGCACGACAAGGCTAGTTCAAGAGATTGA 1200 47.5 MEVEDDHRRKELLVLVVIVVLASLSLVSLLVAFSYYCYISHKVSKRLKIRKRVDLEDEGSFENVEKNSTEKGLQLFTFKQLYSATGGFSKSNVVGHGSFGCVYRGVLNDGRKVAIKLMDQAGKQGEEEFKVEVDLLSRLHSPYLLALLGYCSDNNHKVLVYEFMVNGGLQEHLYPVRRSNSVSVKLDWETRLRVSLEAAKGLEYLHEHVSHPVIHRDFKSSNVLLDKDLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEASLVSWALPRLTDREGVMHIMDPALEGRYSMKDVVQVAAIAAMCVQPEADYRPLMVDVVQSLVPLVRSYRTTSKIGSSSSSSASKSPTAHDKASSRD 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9149477 9152605 - CmoCh19G010530.1 Cmo19g01053 404213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01053 399 MobiDBLite consensus disorder prediction 375 399 - -
Cmo19g01053 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cmo19g01053 399 Gene3D Transferase(Phosphotransferase) domain 1 164 387 - -
Cmo19g01053 399 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Cmo19g01053 399 PANTHER OS01G0750732 PROTEIN 4 396 - -
Cmo19g01053 399 MobiDBLite consensus disorder prediction 375 391 - -
Cmo19g01053 399 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01053 399 CDD STKc_IRAK 94 367 - -
Cmo19g01053 399 Gene3D Phosphorylase Kinase; domain 1 50 163 - -
Cmo19g01053 399 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Cmo19g01053 399 PANTHER OS07G0227300 PROTEIN 4 396 - -
Cmo19g01053 399 SUPERFAMILY Protein kinase-like (PK-like) 64 364 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01155 Cmo-Chr11:6631235 Cmo19g01053 Cmo-Chr19:9149477 1.59E-15 dispersed
Cmo19g01053 Cmo-Chr19:9149477 Cmo04g01023 Cmo-Chr4:5127032 6.32E-104 dispersed
Cmo11g01976 Cmo-Chr11:13587372 Cmo19g01053 Cmo-Chr19:9149477 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75117 PF07714 PK_Tyr_Ser-Thr 4.00E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01053 - - csv:101204636 683.715