Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01060 ATGGATTGCCCCGGTTGCGAAAGCAAAGTCCGAAGCTCGCTCCAAAAATTAAAAGGTGTGGACAACGTTGAAATCGACATGTCGTTACAGAAAGTGACGGTTACCGGGTGGGCGGAGCAAAAGAAGGTTCTGAAAGCGGTTCGGAAAACCGGTCGTCGAGCGGAGCTGTGGCAGTTACCGTACAACCCGGAGCACGATAACGAGAGTGATCCGTACCCACAGCACCATTTAAATGGGCCCGTCCCAAATTTCTATGGGCCCCAGCCCACATCGACTTACAACTATTACAAACATGGGTACGATAATCATGACCAGGCCCATCATCAAAACTTCTCCACACATTCCAACATCTTCGGCCGCCAGACTGGCTCCGTGTTTAGTGACGACAATGTCAATAATTGCTCTGTTATATCGGCCATGGCTTCCAGTAAAGAACGCGAGAACTTCGTTTACGTCGCTAAGCTCGCCGAGCAGGCCGAGCGTTATGATGAAATGGTGGAAGCAATGAAGAATGTTGCAAAGCTTGAGGTTGAATTGACAGTTGAGGAAAGAAACTTACTTTCTGTTGGATACAAGAATGTGGTTGGTGCACGGAGAGCCTCATGGAGGATCTTATCATCAATAGAGCAGAAAGAAGAAGCTAAAGGAAATGAAGCAAATGCTAAACGCATCAAGGAATACAGACAAAAGGTTGAAACAGAGCTCTCTGGTATTTGTGATGATATCATGACAGTGATTGACGAGCACCTAATTCCATTGGCTTCAGCTGGGGAATCAACAGTGTTCTACTATAAGATGAAAGGAGACTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGAAGCAGCTGATCAATCGATGAAGGCATATGAGGCTGCAACCAGCTCAGCCGAATCTGAATTACCCCCCACACATCCTATCCGTTTGGGTTTGGCATTAAATTTCTCAGTCTTCTATTATGAAATCCTGAATTCACCCGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCCATCTCCGAACTTGACACCCTTAACGAGGAGTCATACAAAGATAGCACCTTGATCATGCAGCTTCTTAGGGACAACCTTACATTATGGACTTCTGACATCCCAGAGGATGGAGATGATGCCCAAAAGATCAATGGAACTGCCAAGATTTCTGGTGGTGACGATGCCGAGGTGAGTTGCTCAATCCTTGGTTGCAGTTAG 1230 45.93 MDCPGCESKVRSSLQKLKGVDNVEIDMSLQKVTVTGWAEQKKVLKAVRKTGRRAELWQLPYNPEHDNESDPYPQHHLNGPVPNFYGPQPTSTYNYYKHGYDNHDQAHHQNFSTHSNIFGRQTGSVFSDDNVNNCSVISAMASSKERENFVYVAKLAEQAERYDEMVEAMKNVAKLEVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNEANAKRIKEYRQKVETELSGICDDIMTVIDEHLIPLASAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKINGTAKISGGDDAEVSCSILGCS 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9198427 9202935 + CmoCh19G010600.1 Cmo19g01060 404220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01060 409 SMART 1433_4 146 387 IPR023410 -
Cmo19g01060 409 SUPERFAMILY 14-3-3 protein 145 376 IPR036815 -
Cmo19g01060 409 Coils Coil 334 354 - -
Cmo19g01060 409 Gene3D - 125 388 IPR036815 -
Cmo19g01060 409 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 142 385 - -
Cmo19g01060 409 Coils Coil 152 185 - -
Cmo19g01060 409 SUPERFAMILY HMA, heavy metal-associated domain 1 58 IPR036163 GO:0046872
Cmo19g01060 409 PRINTS 14-3-3 protein zeta signature 227 251 IPR000308 -
Cmo19g01060 409 PRINTS 14-3-3 protein zeta signature 178 207 IPR000308 -
Cmo19g01060 409 PRINTS 14-3-3 protein zeta signature 258 280 IPR000308 -
Cmo19g01060 409 PRINTS 14-3-3 protein zeta signature 347 376 IPR000308 -
Cmo19g01060 409 PRINTS 14-3-3 protein zeta signature 320 346 IPR000308 -
Cmo19g01060 409 PRINTS 14-3-3 protein zeta signature 293 319 IPR000308 -
Cmo19g01060 409 ProSitePatterns 14-3-3 proteins signature 2. 356 375 IPR023409 -
Cmo19g01060 409 Pfam 14-3-3 protein 153 374 IPR023410 -
Cmo19g01060 409 ProSitePatterns 14-3-3 proteins signature 1. 184 194 IPR023409 -
Cmo19g01060 409 PANTHER 14-3-3 PROTEIN 142 385 IPR000308 -
Cmo19g01060 409 Gene3D - 1 56 - -
Cmo19g01060 409 ProSiteProfiles Heavy-metal-associated domain profile. 1 56 IPR006121 GO:0046872
Cmo19g01060 409 Pfam Heavy-metal-associated domain 1 52 IPR006121 GO:0046872
Cmo19g01060 409 CDD HMA 1 55 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01654 Cmo-Chr1:12526061 Cmo19g01060 Cmo-Chr19:9198427 6.38E-121 dispersed
Cmo05g00474 Cmo-Chr5:2214382 Cmo19g01060 Cmo-Chr19:9198427 1.63E-121 dispersed
Cmo05g00524 Cmo-Chr5:2530297 Cmo19g01060 Cmo-Chr19:9198427 1.22E-146 dispersed
Cmo12g00080 Cmo-Chr12:434239 Cmo19g01060 Cmo-Chr19:9198427 7.49E-145 dispersed
Cmo19g01060 Cmo-Chr19:9198427 Cmo01g00475 Cmo-Chr1:2267892 2.37E-125 dispersed
Cmo11g01966 Cmo-Chr11:13528927 Cmo19g01060 Cmo-Chr19:9198427 3.48E-157 wgd
Cmo13g00634 Cmo-Chr13:6805771 Cmo19g01060 Cmo-Chr19:9198427 4.56E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01060 K06630 - csv:101208446 486.108